PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d2gqfa2  ( 195 )     slVpFtYretdkfLtaLsgisL-pVtItAlcgksfy-nqLlFthrGIsg
d2i0za2  ( 193 )    pteVpIlSnepfIrdrsLqglaLrdInLsVlnaiiShkmdMlFthfGLsg
                         bb              bb bbbbbb    bbb bbbbb   bbb 

                             60        70        80        90        100 
d2gqfa2  ( 242 )    pAVlqISnywqp--------tesVeIdLLPnh----nVeeIn--aksspk
d2i0za2  ( 247 )    pAAlrCSqfVvkalkkfktntiqMsIdAlpeenseqLFqrMlkqMkedpk
                    aaaaaa                 bbbb                       

                             110       120       130       140       150 
d2gqfa2  ( 281 )    -qLktILvrlLp-kLVelWieqgivqd-evIaniskvrVknlvdfIhhwe
d2i0za2  ( 297 )    kgIknvLkgYVperYFlfLLekneIdgseqAgqVshekIraLVkdFkeFt
                       aaa        aaaaaaa         333  aaaaaaaaaaaa bb

                             160   
d2gqfa2  ( 330 )    FtPngtEgyrtae  
d2i0za2  ( 347 )    VnVngTqsiekAfvt
                    b   bb

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d2gqfa2 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2gqfa2 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Hypothetical protein HI0933	HI0933 insert domain-like	Haemophilus influenzae [TaxId: 727]		view
d2i0za2 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2i0za2 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Flavoprotein BC4706	HI0933 insert domain-like	Bacillus cereus [TaxId: 1396]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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P	T	E	V	P	I	L	S	N	E	P	F	I	R	D	R	S	L	Q	G	L	A	L	R	D	I	N	L	S	V	L	N	A	I	I	S	H	K	M	D	M	L	F	T	H	F	G	L	S	G	P	A	A	L	R	C	S	Q	F	V	V	K	A	L	K	K	F	K	T	N	T	I	Q	M	S	I	D	A	L	P	E	E	N	S	E	Q	L	F	Q	R	M	L	K	Q	M	K	E	D	P	K	K	G	I	K	N	V	L	K	G	Y	V	P	E	R	Y	F	L	F	L	L	E	K	N	E	I	D	G	S	E	Q	A	G	Q	V	S	H	E	K	I	R	A	L	V	K	D	F	K	E	F	T	V	N	V	N	G	T	Q	S	I	E	K	A	F	V	T

Member	Chain	UniProtKB	GO term
d2i0za2	A	Q816V9	GO:0000166

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