PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d2r31a2  (   4 )                        msewka--rrfWasVgihkee-ggwAVlld
d2r6ia1  (   2 )    rdllnDLseGlshpdpilraqIqqkplPkrFYkdVtVadveeggftIlld
                                         a            bbbbb     bbbbb 

                             60        70        80        90        100 
d2r31a2  (  31 )    erplrTpgkqpLrLpteaLAlaIaeewqavqevidpnaMpltrsAnsAie
d2r6ia1  (  53 )    gkplrTpakkpLvApsraLAdlLrdeWdaqkevVnPv-vpvsrhVntAid
                     bb             aaaaaaaaaaaa            aaaaaaaaaa

                             110       120       130       140       150 
d2r31a2  (  81 )    kvapqfdavAamLGdyGgtDlLSyRadapeaLvraQaegWdpLidwAate
d2r6ia1  ( 103 )    giasdtqavfedIlrfSssDlLCyragdpealvarQtdyWdpVldwAtnv
                      333aaaaaaaaaa        bb    aaaaaaaaaaaaaaaaaaaaa

                             160       170       180       190       200 
d2r31a2  ( 131 )    lrApLriThgvipvpQdpvVllkLraeVasLd-pfGLtALhdLVtlPgSL
d2r6ia1  ( 153 )    lgArFilvegv-hrdQpreAiaaFavtLkkydtpIALAALht-TsltgSA
                           bb        aaaaaaaaaaaa    aaaaaaaa        a

                             210       220       230       240       250 
d2r31a2  ( 180 )    ILGLAVIrgridAptAhalSrideefqaerwgrdeeaeaqAasrlaaMrd
d2r6ia1  ( 203 )    ILaLAlAegeltleeAwalAHldedwtaeqwgedeealerravrlid-ra
                    aaaaaaa     aaaaaaa  aaaaaaaaaa   aaaaaaaaaa     a

                             
d2r31a2  ( 230 )    serFWhlTr
d2r6ia1  ( 253 )    alnVleSlk
                    aaaaaaa

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d2r31a2 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2r31a2 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	ATP12 ATPase	ATP12-like	Paracoccus denitrificans [TaxId: 266]		view
d2r6ia1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2r6ia1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Uncharacterized protein Atu1473	ATP12-like	Agrobacterium tumefaciens [TaxId: 358]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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Member	Chain	UniProtKB	GO term
d2r6ia1	A	A9CJ14	GO:0043461

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R	D	L	L	N	D	L	S	E	G	L	S	H	P	D	P	I	L	R	A	Q	I	Q	Q	K	P	L	P	K	R	F	Y	K	D	V	T	V	A	D	V	E	E	G	G	F	T	I	L	L	D	G	K	P	L	R	T	P	A	K	K	P	L	V	A	P	S	R	A	L	A	D	L	L	R	D	E	W	D	A	Q	K	E	V	V	N	P	V	-	V	P	V	S	R	H	V	N	T	A	I	D	G	I	A	S	D	T	Q	A	V	F	E	D	I	L	R	F	S	S	S	D	L	L	C	Y	R	A	G	D	P	E	A	L	V	A	R	Q	T	D	Y	W	D	P	V	L	D	W	A	T	N	V	L	G	A	R	F	I	L	V	E	G	V	-	H	R	D	Q	P	R	E	A	I	A	A	F	A	V	T	L	K	K	Y	D	T	P	I	A	L	A	A	L	H	T	-	T	S	L	T	G	S	A	I	L	A	L	A	L	A	E	G	E	L	T	L	E	E	A	W	A	L	A	H	L	D	E	D	W	T	A	E	Q	W	G	E	D	E	E	A	L	E	R	R	A	V	R	L	I	D	-	R	A	A	L	N	V	L	E	S	L	K

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