PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d2icga1  (   2 )    assFleeVdrLitlSgitF-haSgtGtpelIkiYqdaLgn-FpeTYklFL
d2paga1  (   1 )        leevieqLreanepvpvplelPdedqLveIeeqlfinIpfvFkeFL
d2prva1  (   2 )        iysVenfInenkqnA-iftegAshenigrIeenLqcdLPnSYkwFL
                            aaaaaa             aaaaaaaaaaa     aaaaaaa

                             60        70        80        90        100 
d2icga1  (  51 )    ekyGTLtFngvsFyGIskrglsaasipDVkfaTeqartf-gdine--IIk
d2paga1  (  47 )    ltVSdVvygslePVtVTdp----qshtyLpeVCatAwdl-gVprelIPIC
d2prva1  (  48 )    ekyGAgGLfgvlVlGynfd------hasVvnrTneYkehygLtdgLVVIe
                    aa                          aaaaaaaaaa          bb

                             110       120       130       140       150 
d2icga1  ( 101 )    nsgygsifsIDtsiigsegepVIVeTnlsfdntekkvvanSFGeFLleeI
d2paga1  (  92 )    qdg-edYyCVee-------dgtVllwsal----vteeswesVwhWArdvW
d2prva1  (  92 )    Dvd-yfAyCLdTn----dgecpVVewdrv--igyqdtvadSFIeFFynkI
                    b     bbbb            bbbb         bbbb  aaaaaaa  

                             160   
d2icga1  ( 152 )    elsltdl        
d2paga1  ( 133 )    Les            
d2prva1  ( 138 )    qeakddwdededwdd

Domains
Outliers

Domain ID	Name	Family	Source	STRING-DB
d2icga1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2icga1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Uncharacterized protein Lin2918	SMI1/KNR4-like	Listeria innocua [TaxId: 1642]	view
d2paga1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2paga1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Hypothetical protein PSPTO5518	SMI1/KNR4-like	Pseudomonas syringae pv. tomato [TaxId: 323]	view
d2prva1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2prva1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Uncharacterized protein YobK	SMI1/KNR4-like	Bacillus subtilis [TaxId: 1423]	view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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Member	Chain	UniProtKB	GO term
d2paga1	A	Q87TZ9	GO:0046872
d2prva1	A	O34596	GO:0005737

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