PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d3db7a1  (  20 )    adddkpiqvtq-pqlaqqfikqhFs-skvalakesdfl-ysyeViFtngN
d4dsda-  (  21 )      kdvitkdnqLplpArnfinsnFtkpqvahIkidkdestkyeVvLd-gT
                                 aaaaaaaaaa       bbb        bbbb     

                             60        70        80        90        100 
d3db7a1  (  71 )    kVeFd--GnweeVdCkhtsVpvaIIpaaIqkyVtt-nypdAkVlkIerd-
d4dsda-  (  72 )    eIdFdskGnweeVsAkgqtVpvsIVpgfAvnylkahnfvnegvtkVerdr
                    bbbb     bbbbb       333  aaaaaaaaa       bbbbbb  

                             110       120    
d3db7a1  ( 119 )    kdyeVkLsn-TeLkFdlkfnlididn
d4dsda-  ( 123 )    kGyeIeLstglsfkFd-kgkfikt  
                      bbbbb    bbbb

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d3db7a1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d3db7a1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	BT0923-like	Bacteroides thetaiotaomicron [TaxId: 818]		view
d4dsda- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d4dsda- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Bacteroides ovatus [TaxId: 411476]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

									10										20										30										40										50										60										70										80										90										100										110										120
A	D	D	D	K	P	I	Q	V	T	Q	-	P	Q	L	A	Q	Q	F	I	K	Q	H	F	S	-	S	K	V	A	L	A	K	E	S	D	F	L	-	Y	S	Y	E	V	I	F	T	N	G	N	K	V	E	F	D	-	-	G	N	W	E	E	V	D	C	K	H	T	S	V	P	V	A	I	I	P	A	A	I	Q	K	Y	V	T	T	-	N	Y	P	D	A	K	V	L	K	I	E	R	D	-	K	D	Y	E	V	K	L	S	N	-	T	E	L	K	F	D	L	K	F	N	L	I	D	I	D	N
-	-	K	D	V	I	T	K	D	N	Q	L	P	L	P	A	R	N	F	I	N	S	N	F	T	K	P	Q	V	A	H	I	K	I	D	K	D	E	S	T	K	Y	E	V	V	L	D	-	G	T	E	I	D	F	D	S	K	G	N	W	E	E	V	S	A	K	G	Q	T	V	P	V	S	I	V	P	G	F	A	V	N	Y	L	K	A	H	N	F	V	N	E	G	V	T	K	V	E	R	D	R	K	G	Y	E	I	E	L	S	T	G	L	S	F	K	F	D	-	K	G	K	F	I	K	T	-	-

Member	Chain	UniProtKB	GO term

									10										20										30										40										50										60										70										80										90										100										110										120
A	D	D	D	K	P	I	Q	V	T	Q	-	P	Q	L	A	Q	Q	F	I	K	Q	H	F	S	-	S	K	V	A	L	A	K	E	S	D	F	L	-	Y	S	Y	E	V	I	F	T	N	G	N	K	V	E	F	D	-	-	G	N	W	E	E	V	D	C	K	H	T	S	V	P	V	A	I	I	P	A	A	I	Q	K	Y	V	T	T	-	N	Y	P	D	A	K	V	L	K	I	E	R	D	-	K	D	Y	E	V	K	L	S	N	-	T	E	L	K	F	D	L	K	F	N	L	I	D	I	D	N
-	-	K	D	V	I	T	K	D	N	Q	L	P	L	P	A	R	N	F	I	N	S	N	F	T	K	P	Q	V	A	H	I	K	I	D	K	D	E	S	T	K	Y	E	V	V	L	D	-	G	T	E	I	D	F	D	S	K	G	N	W	E	E	V	S	A	K	G	Q	T	V	P	V	S	I	V	P	G	F	A	V	N	Y	L	K	A	H	N	F	V	N	E	G	V	T	K	V	E	R	D	R	K	G	Y	E	I	E	L	S	T	G	L	S	F	K	F	D	-	K	G	K	F	I	K	T	-	-

									10										20										30										40										50										60										70										80										90										100										110										120
A	D	D	D	K	P	I	Q	V	T	Q	-	P	Q	L	A	Q	Q	F	I	K	Q	H	F	S	-	S	K	V	A	L	A	K	E	S	D	F	L	-	Y	S	Y	E	V	I	F	T	N	G	N	K	V	E	F	D	-	-	G	N	W	E	E	V	D	C	K	H	T	S	V	P	V	A	I	I	P	A	A	I	Q	K	Y	V	T	T	-	N	Y	P	D	A	K	V	L	K	I	E	R	D	-	K	D	Y	E	V	K	L	S	N	-	T	E	L	K	F	D	L	K	F	N	L	I	D	I	D	N
-	-	K	D	V	I	T	K	D	N	Q	L	P	L	P	A	R	N	F	I	N	S	N	F	T	K	P	Q	V	A	H	I	K	I	D	K	D	E	S	T	K	Y	E	V	V	L	D	-	G	T	E	I	D	F	D	S	K	G	N	W	E	E	V	S	A	K	G	Q	T	V	P	V	S	I	V	P	G	F	A	V	N	Y	L	K	A	H	N	F	V	N	E	G	V	T	K	V	E	R	D	R	K	G	Y	E	I	E	L	S	T	G	L	S	F	K	F	D	-	K	G	K	F	I	K	T	-	-

									10										20										30										40										50										60										70										80										90										100										110										120
A	D	D	D	K	P	I	Q	V	T	Q	-	P	Q	L	A	Q	Q	F	I	K	Q	H	F	S	-	S	K	V	A	L	A	K	E	S	D	F	L	-	Y	S	Y	E	V	I	F	T	N	G	N	K	V	E	F	D	-	-	G	N	W	E	E	V	D	C	K	H	T	S	V	P	V	A	I	I	P	A	A	I	Q	K	Y	V	T	T	-	N	Y	P	D	A	K	V	L	K	I	E	R	D	-	K	D	Y	E	V	K	L	S	N	-	T	E	L	K	F	D	L	K	F	N	L	I	D	I	D	N
-	-	K	D	V	I	T	K	D	N	Q	L	P	L	P	A	R	N	F	I	N	S	N	F	T	K	P	Q	V	A	H	I	K	I	D	K	D	E	S	T	K	Y	E	V	V	L	D	-	G	T	E	I	D	F	D	S	K	G	N	W	E	E	V	S	A	K	G	Q	T	V	P	V	S	I	V	P	G	F	A	V	N	Y	L	K	A	H	N	F	V	N	E	G	V	T	K	V	E	R	D	R	K	G	Y	E	I	E	L	S	T	G	L	S	F	K	F	D	-	K	G	K	F	I	K	T	-	-