PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d2dm9a1  (  81 )    eiissvleevkrrletmsedeyFesVKalLkeAIkeLnekkVrVMSnekT
d3k5ba1  (  78 )    evleevrrrvreaealpq-pewpvraaap------------gaavan--p
d4efae2  (  98 )    gifeetkeklsgiAnn--rdeYkpiLqslIVeALlkLlepkAiVkALerD
                     aaaaaaaaaaa                                      

                             60        70        80        90        100 
d2dm9a1  ( 131 )    LglIasrieeIkselg------dV-sIelg-etvd---TmGGViVeTedg
d3k5ba1  ( 128 )    lphaag-----------------------------vlaeplgvavg-aeg
d4efae2  ( 146 )    vdlIesMkddImreYgekaqrapLeeIvIsndylnkdlvsGGVVVsNasd
                                                                      

                             110       120       130 
d2dm9a1  ( 170 )    riridNtfearmerfegeirstiakvlfg  
d3k5ba1  ( 161 )    tqvnslardrawdas--svaqalwg      
d4efae2  ( 196 )    kieinNTleerlkllseealpairlelygps
                                       aaaa

Domains
Outliers

Domain ID	Name	Family	Source	STRING-DB
d2dm9a1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2dm9a1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	V-type ATPase subunit E C-terminal domain	V-type ATPase subunit E C-terminal domain	Pyrococcus horikoshii [TaxId: 53953]	view
d3k5ba1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d3k5ba1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	V-type ATPase subunit E C-terminal domain	V-type ATPase subunit E C-terminal domain	Thermus thermophilus HB8 [TaxId: 300852]	view
d4efae2 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d4efae2 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	V-type ATPase subunit E C-terminal domain	V-type ATPase subunit E C-terminal domain	Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]	view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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E	I	I	S	S	V	L	E	E	V	K	R	R	L	E	T	M	S	E	D	E	Y	F	E	S	V	K	A	L	L	K	E	A	I	K	E	L	N	E	K	K	V	R	V	M	S	N	E	K	T	L	G	L	I	A	S	R	I	E	E	I	K	S	E	L	G	-	-	-	-	-	-	D	V	-	S	I	E	L	G	-	E	T	V	D	-	-	-	T	M	G	G	V	I	V	E	T	E	D	G	R	I	R	I	D	N	T	F	E	A	R	M	E	R	F	E	G	E	I	R	S	T	I	A	K	V	L	F	G	-	-
E	V	L	E	E	V	R	R	R	V	R	E	A	E	A	L	P	Q	-	P	E	W	P	V	R	A	A	A	P	-	-	-	-	-	-	-	-	-	-	-	-	G	A	A	V	A	N	-	-	P	L	P	H	A	A	G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	V	L	A	E	P	L	G	V	A	V	G	-	A	E	G	T	Q	V	N	S	L	A	R	D	R	A	W	D	A	S	-	-	S	V	A	Q	A	L	W	G	-	-	-	-	-	-
G	I	F	E	E	T	K	E	K	L	S	G	I	A	N	N	-	-	R	D	E	Y	K	P	I	L	Q	S	L	I	V	E	A	L	L	K	L	L	E	P	K	A	I	V	K	A	L	E	R	D	V	D	L	I	E	S	M	K	D	D	I	M	R	E	Y	G	E	K	A	Q	R	A	P	L	E	E	I	V	I	S	N	D	Y	L	N	K	D	L	V	S	G	G	V	V	V	S	N	A	S	D	K	I	E	I	N	N	T	L	E	E	R	L	K	L	L	S	E	E	A	L	P	A	I	R	L	E	L	Y	G	P	S

Member	Chain	UniProtKB	GO term
d2dm9a1	A	O57724	GO:0005524
d2dm9a1	A	O57724	GO:0006754
d2dm9a1	A	O57724	GO:0033178
d2dm9a1	A	O57724	GO:0042777
d2dm9a1	A	O57724	GO:0046933
d2dm9a1	A	O57724	GO:0046961
d2dm9a1	A	O57724	GO:1902600

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E	I	I	S	S	V	L	E	E	V	K	R	R	L	E	T	M	S	E	D	E	Y	F	E	S	V	K	A	L	L	K	E	A	I	K	E	L	N	E	K	K	V	R	V	M	S	N	E	K	T	L	G	L	I	A	S	R	I	E	E	I	K	S	E	L	G	-	-	-	-	-	-	D	V	-	S	I	E	L	G	-	E	T	V	D	-	-	-	T	M	G	G	V	I	V	E	T	E	D	G	R	I	R	I	D	N	T	F	E	A	R	M	E	R	F	E	G	E	I	R	S	T	I	A	K	V	L	F	G	-	-
E	V	L	E	E	V	R	R	R	V	R	E	A	E	A	L	P	Q	-	P	E	W	P	V	R	A	A	A	P	-	-	-	-	-	-	-	-	-	-	-	-	G	A	A	V	A	N	-	-	P	L	P	H	A	A	G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	V	L	A	E	P	L	G	V	A	V	G	-	A	E	G	T	Q	V	N	S	L	A	R	D	R	A	W	D	A	S	-	-	S	V	A	Q	A	L	W	G	-	-	-	-	-	-
G	I	F	E	E	T	K	E	K	L	S	G	I	A	N	N	-	-	R	D	E	Y	K	P	I	L	Q	S	L	I	V	E	A	L	L	K	L	L	E	P	K	A	I	V	K	A	L	E	R	D	V	D	L	I	E	S	M	K	D	D	I	M	R	E	Y	G	E	K	A	Q	R	A	P	L	E	E	I	V	I	S	N	D	Y	L	N	K	D	L	V	S	G	G	V	V	V	S	N	A	S	D	K	I	E	I	N	N	T	L	E	E	R	L	K	L	L	S	E	E	A	L	P	A	I	R	L	E	L	Y	G	P	S

									10										20										30										40										50										60										70										80										90										100										110										120										130
E	I	I	S	S	V	L	E	E	V	K	R	R	L	E	T	M	S	E	D	E	Y	F	E	S	V	K	A	L	L	K	E	A	I	K	E	L	N	E	K	K	V	R	V	M	S	N	E	K	T	L	G	L	I	A	S	R	I	E	E	I	K	S	E	L	G	-	-	-	-	-	-	D	V	-	S	I	E	L	G	-	E	T	V	D	-	-	-	T	M	G	G	V	I	V	E	T	E	D	G	R	I	R	I	D	N	T	F	E	A	R	M	E	R	F	E	G	E	I	R	S	T	I	A	K	V	L	F	G	-	-
E	V	L	E	E	V	R	R	R	V	R	E	A	E	A	L	P	Q	-	P	E	W	P	V	R	A	A	A	P	-	-	-	-	-	-	-	-	-	-	-	-	G	A	A	V	A	N	-	-	P	L	P	H	A	A	G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	V	L	A	E	P	L	G	V	A	V	G	-	A	E	G	T	Q	V	N	S	L	A	R	D	R	A	W	D	A	S	-	-	S	V	A	Q	A	L	W	G	-	-	-	-	-	-
G	I	F	E	E	T	K	E	K	L	S	G	I	A	N	N	-	-	R	D	E	Y	K	P	I	L	Q	S	L	I	V	E	A	L	L	K	L	L	E	P	K	A	I	V	K	A	L	E	R	D	V	D	L	I	E	S	M	K	D	D	I	M	R	E	Y	G	E	K	A	Q	R	A	P	L	E	E	I	V	I	S	N	D	Y	L	N	K	D	L	V	S	G	G	V	V	V	S	N	A	S	D	K	I	E	I	N	N	T	L	E	E	R	L	K	L	L	S	E	E	A	L	P	A	I	R	L	E	L	Y	G	P	S

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E	I	I	S	S	V	L	E	E	V	K	R	R	L	E	T	M	S	E	D	E	Y	F	E	S	V	K	A	L	L	K	E	A	I	K	E	L	N	E	K	K	V	R	V	M	S	N	E	K	T	L	G	L	I	A	S	R	I	E	E	I	K	S	E	L	G	-	-	-	-	-	-	D	V	-	S	I	E	L	G	-	E	T	V	D	-	-	-	T	M	G	G	V	I	V	E	T	E	D	G	R	I	R	I	D	N	T	F	E	A	R	M	E	R	F	E	G	E	I	R	S	T	I	A	K	V	L	F	G	-	-
E	V	L	E	E	V	R	R	R	V	R	E	A	E	A	L	P	Q	-	P	E	W	P	V	R	A	A	A	P	-	-	-	-	-	-	-	-	-	-	-	-	G	A	A	V	A	N	-	-	P	L	P	H	A	A	G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	V	L	A	E	P	L	G	V	A	V	G	-	A	E	G	T	Q	V	N	S	L	A	R	D	R	A	W	D	A	S	-	-	S	V	A	Q	A	L	W	G	-	-	-	-	-	-
G	I	F	E	E	T	K	E	K	L	S	G	I	A	N	N	-	-	R	D	E	Y	K	P	I	L	Q	S	L	I	V	E	A	L	L	K	L	L	E	P	K	A	I	V	K	A	L	E	R	D	V	D	L	I	E	S	M	K	D	D	I	M	R	E	Y	G	E	K	A	Q	R	A	P	L	E	E	I	V	I	S	N	D	Y	L	N	K	D	L	V	S	G	G	V	V	V	S	N	A	S	D	K	I	E	I	N	N	T	L	E	E	R	L	K	L	L	S	E	E	A	L	P	A	I	R	L	E	L	Y	G	P	S