PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d2ckaa1  (2028 )              ldvdletripvinkvdgtllvgedAprraelemwlqghpe
d2v0fa1  (2629 )    gsrnPnkldintltGeErvPvvnkrnGkKmGgamAPpMkdlprwleenpe
                                        bbb     bb          aaaaaaa   

                             60        70        80      
d2ckaa1  (2068 )    favDprFlaymedrrkqk                   
d2v0fa1  (2679 )    fAvApdWtdivkqSgfvpesmfdrlltgPvvrgegas
                    bbb aaaaaaaaa

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d2ckaa1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2ckaa1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Chromodomain-helicase-dna-binding protein 8, CHD8	BRK domain-like	Human (Homo sapiens) [TaxId: 9606]		view
d2v0fa1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2v0fa1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Chromodomain-helicase-DNA-binding protein 7, CHD7	BRK domain-like	Human (Homo sapiens) [TaxId: 9606]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

									10										20										30										40										50										60										70										80
-	-	-	-	-	-	-	-	-	-	L	D	V	D	L	E	T	R	I	P	V	I	N	K	V	D	G	T	L	L	V	G	E	D	A	P	R	R	A	E	L	E	M	W	L	Q	G	H	P	E	F	A	V	D	P	R	F	L	A	Y	M	E	D	R	R	K	Q	K	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
G	S	R	N	P	N	K	L	D	I	N	T	L	T	G	E	E	R	V	P	V	V	N	K	R	N	G	K	K	M	G	G	A	M	A	P	P	M	K	D	L	P	R	W	L	E	E	N	P	E	F	A	V	A	P	D	W	T	D	I	V	K	Q	S	G	F	V	P	E	S	M	F	D	R	L	L	T	G	P	V	V	R	G	E	G	A	S

Member	Chain	UniProtKB	GO term

									10										20										30										40										50										60										70										80
-	-	-	-	-	-	-	-	-	-	L	D	V	D	L	E	T	R	I	P	V	I	N	K	V	D	G	T	L	L	V	G	E	D	A	P	R	R	A	E	L	E	M	W	L	Q	G	H	P	E	F	A	V	D	P	R	F	L	A	Y	M	E	D	R	R	K	Q	K	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
G	S	R	N	P	N	K	L	D	I	N	T	L	T	G	E	E	R	V	P	V	V	N	K	R	N	G	K	K	M	G	G	A	M	A	P	P	M	K	D	L	P	R	W	L	E	E	N	P	E	F	A	V	A	P	D	W	T	D	I	V	K	Q	S	G	F	V	P	E	S	M	F	D	R	L	L	T	G	P	V	V	R	G	E	G	A	S

									10										20										30										40										50										60										70										80
-	-	-	-	-	-	-	-	-	-	L	D	V	D	L	E	T	R	I	P	V	I	N	K	V	D	G	T	L	L	V	G	E	D	A	P	R	R	A	E	L	E	M	W	L	Q	G	H	P	E	F	A	V	D	P	R	F	L	A	Y	M	E	D	R	R	K	Q	K	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
G	S	R	N	P	N	K	L	D	I	N	T	L	T	G	E	E	R	V	P	V	V	N	K	R	N	G	K	K	M	G	G	A	M	A	P	P	M	K	D	L	P	R	W	L	E	E	N	P	E	F	A	V	A	P	D	W	T	D	I	V	K	Q	S	G	F	V	P	E	S	M	F	D	R	L	L	T	G	P	V	V	R	G	E	G	A	S

									10										20										30										40										50										60										70										80
-	-	-	-	-	-	-	-	-	-	L	D	V	D	L	E	T	R	I	P	V	I	N	K	V	D	G	T	L	L	V	G	E	D	A	P	R	R	A	E	L	E	M	W	L	Q	G	H	P	E	F	A	V	D	P	R	F	L	A	Y	M	E	D	R	R	K	Q	K	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
G	S	R	N	P	N	K	L	D	I	N	T	L	T	G	E	E	R	V	P	V	V	N	K	R	N	G	K	K	M	G	G	A	M	A	P	P	M	K	D	L	P	R	W	L	E	E	N	P	E	F	A	V	A	P	D	W	T	D	I	V	K	Q	S	G	F	V	P	E	S	M	F	D	R	L	L	T	G	P	V	V	R	G	E	G	A	S