PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d2vy6a2  ( 686 )      vesavlrgflIlgkedrrygpalsineLsnlakgekANVligqgdvvl
d5d9ac1  ( 702 )    mdtslallegFsvce--ndprApmvtrqdLidvgfgqkVrLfvgqgsvrt
                              bbb             33333       bbbb     bbb

                             60        70  
d2vy6a2  ( 734 )    Vmkrkrds              
d5d9ac1  ( 750 )    fkrtasqraassdvnknvkkik
                    bbb

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d2vy6a2 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2vy6a2 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Influenza A virus [TaxId: 11320]		view
d5d9ac1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d5d9ac1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Polymerase basic protein 2, PB2	PB2 C-terminal domain-like	Influenza C virus (strain c/johannesburg/1/1966) [TaxId: 100673]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

									10										20										30										40										50										60										70
-	-	V	E	S	A	V	L	R	G	F	L	I	L	G	K	E	D	R	R	Y	G	P	A	L	S	I	N	E	L	S	N	L	A	K	G	E	K	A	N	V	L	I	G	Q	G	D	V	V	L	V	M	K	R	K	R	D	S	-	-	-	-	-	-	-	-	-	-	-	-	-	-
M	D	T	S	L	A	L	L	E	G	F	S	V	C	E	-	-	N	D	P	R	A	P	M	V	T	R	Q	D	L	I	D	V	G	F	G	Q	K	V	R	L	F	V	G	Q	G	S	V	R	T	F	K	R	T	A	S	Q	R	A	A	S	S	D	V	N	K	N	V	K	K	I	K

Member	Chain	UniProtKB	GO term

									10										20										30										40										50										60										70
-	-	V	E	S	A	V	L	R	G	F	L	I	L	G	K	E	D	R	R	Y	G	P	A	L	S	I	N	E	L	S	N	L	A	K	G	E	K	A	N	V	L	I	G	Q	G	D	V	V	L	V	M	K	R	K	R	D	S	-	-	-	-	-	-	-	-	-	-	-	-	-	-
M	D	T	S	L	A	L	L	E	G	F	S	V	C	E	-	-	N	D	P	R	A	P	M	V	T	R	Q	D	L	I	D	V	G	F	G	Q	K	V	R	L	F	V	G	Q	G	S	V	R	T	F	K	R	T	A	S	Q	R	A	A	S	S	D	V	N	K	N	V	K	K	I	K

									10										20										30										40										50										60										70
-	-	V	E	S	A	V	L	R	G	F	L	I	L	G	K	E	D	R	R	Y	G	P	A	L	S	I	N	E	L	S	N	L	A	K	G	E	K	A	N	V	L	I	G	Q	G	D	V	V	L	V	M	K	R	K	R	D	S	-	-	-	-	-	-	-	-	-	-	-	-	-	-
M	D	T	S	L	A	L	L	E	G	F	S	V	C	E	-	-	N	D	P	R	A	P	M	V	T	R	Q	D	L	I	D	V	G	F	G	Q	K	V	R	L	F	V	G	Q	G	S	V	R	T	F	K	R	T	A	S	Q	R	A	A	S	S	D	V	N	K	N	V	K	K	I	K

									10										20										30										40										50										60										70
-	-	V	E	S	A	V	L	R	G	F	L	I	L	G	K	E	D	R	R	Y	G	P	A	L	S	I	N	E	L	S	N	L	A	K	G	E	K	A	N	V	L	I	G	Q	G	D	V	V	L	V	M	K	R	K	R	D	S	-	-	-	-	-	-	-	-	-	-	-	-	-	-
M	D	T	S	L	A	L	L	E	G	F	S	V	C	E	-	-	N	D	P	R	A	P	M	V	T	R	Q	D	L	I	D	V	G	F	G	Q	K	V	R	L	F	V	G	Q	G	S	V	R	T	F	K	R	T	A	S	Q	R	A	A	S	S	D	V	N	K	N	V	K	K	I	K