PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d2hpua1  (  35 )     kAqiflegspaplffsqvrdAiayArgpeqiapilviyvnDMG--aagA
d3f0pa2  (  81 )    tsyvFeid--drrlyAwCAldTLIfPali---grtArVsShCaatgapVs
                      bbbbb     bbbb  aaaaaaaa         bbbbbb         

                             60        70        80        90        100 
d2hpua1  (  82 )    twdqpgdgnwiaAdkafYvvGsarrggm------gap-eAvPfssrdeAa
d3f0pa2  ( 126 )    LtVspseIqavepagMAVSlVl---pqeaadvrqSfCchVhFFasvptAe
                            bbbb    bbbb                     bb  aaaaa

                             110       120       130       140  
d2hpua1  ( 125 )    afvla----eGgqvlaladitdaMvltpvetgsePradde    
d3f0pa2  ( 173 )    dwaskhqgleglaIvsVheAfglGq--------efnrhllqtms
                    aaa         bbbb     aaaa

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d2hpua1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2hpua1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	NosL	NosL-like	Achromobacter cycloclastes [TaxId: 223]		view
d3f0pa2 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d3f0pa2 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Alkylmercury lyase MerB	MerB-like	Escherichia coli [TaxId: 562]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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-	K	A	Q	I	F	L	E	G	S	P	A	P	L	F	F	S	Q	V	R	D	A	I	A	Y	A	R	G	P	E	Q	I	A	P	I	L	V	I	Y	V	N	D	M	G	-	-	A	A	G	A	T	W	D	Q	P	G	D	G	N	W	I	A	A	D	K	A	F	Y	V	V	G	S	A	R	R	G	G	M	-	-	-	-	-	-	G	A	P	-	E	A	V	P	F	S	S	R	D	E	A	A	A	F	V	L	A	-	-	-	-	E	G	G	Q	V	L	A	L	A	D	I	T	D	A	M	V	L	T	P	V	E	T	G	S	E	P	R	A	D	D	E	-	-	-	-
T	S	Y	V	F	E	I	D	-	-	D	R	R	L	Y	A	W	C	A	L	D	T	L	I	F	P	A	L	I	-	-	-	G	R	T	A	R	V	S	S	H	C	A	A	T	G	A	P	V	S	L	T	V	S	P	S	E	I	Q	A	V	E	P	A	G	M	A	V	S	L	V	L	-	-	-	P	Q	E	A	A	D	V	R	Q	S	F	C	C	H	V	H	F	F	A	S	V	P	T	A	E	D	W	A	S	K	H	Q	G	L	E	G	L	A	I	V	S	V	H	E	A	F	G	L	G	Q	-	-	-	-	-	-	-	-	E	F	N	R	H	L	L	Q	T	M	S

Member	Chain	UniProtKB	GO term
d2hpua1	A	O68481	GO:0005886
d2hpua1	A	O68481	GO:0046872

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T	S	Y	V	F	E	I	D	-	-	D	R	R	L	Y	A	W	C	A	L	D	T	L	I	F	P	A	L	I	-	-	-	G	R	T	A	R	V	S	S	H	C	A	A	T	G	A	P	V	S	L	T	V	S	P	S	E	I	Q	A	V	E	P	A	G	M	A	V	S	L	V	L	-	-	-	P	Q	E	A	A	D	V	R	Q	S	F	C	C	H	V	H	F	F	A	S	V	P	T	A	E	D	W	A	S	K	H	Q	G	L	E	G	L	A	I	V	S	V	H	E	A	F	G	L	G	Q	-	-	-	-	-	-	-	-	E	F	N	R	H	L	L	Q	T	M	S

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T	S	Y	V	F	E	I	D	-	-	D	R	R	L	Y	A	W	C	A	L	D	T	L	I	F	P	A	L	I	-	-	-	G	R	T	A	R	V	S	S	H	C	A	A	T	G	A	P	V	S	L	T	V	S	P	S	E	I	Q	A	V	E	P	A	G	M	A	V	S	L	V	L	-	-	-	P	Q	E	A	A	D	V	R	Q	S	F	C	C	H	V	H	F	F	A	S	V	P	T	A	E	D	W	A	S	K	H	Q	G	L	E	G	L	A	I	V	S	V	H	E	A	F	G	L	G	Q	-	-	-	-	-	-	-	-	E	F	N	R	H	L	L	Q	T	M	S

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-	K	A	Q	I	F	L	E	G	S	P	A	P	L	F	F	S	Q	V	R	D	A	I	A	Y	A	R	G	P	E	Q	I	A	P	I	L	V	I	Y	V	N	D	M	G	-	-	A	A	G	A	T	W	D	Q	P	G	D	G	N	W	I	A	A	D	K	A	F	Y	V	V	G	S	A	R	R	G	G	M	-	-	-	-	-	-	G	A	P	-	E	A	V	P	F	S	S	R	D	E	A	A	A	F	V	L	A	-	-	-	-	E	G	G	Q	V	L	A	L	A	D	I	T	D	A	M	V	L	T	P	V	E	T	G	S	E	P	R	A	D	D	E	-	-	-	-
T	S	Y	V	F	E	I	D	-	-	D	R	R	L	Y	A	W	C	A	L	D	T	L	I	F	P	A	L	I	-	-	-	G	R	T	A	R	V	S	S	H	C	A	A	T	G	A	P	V	S	L	T	V	S	P	S	E	I	Q	A	V	E	P	A	G	M	A	V	S	L	V	L	-	-	-	P	Q	E	A	A	D	V	R	Q	S	F	C	C	H	V	H	F	F	A	S	V	P	T	A	E	D	W	A	S	K	H	Q	G	L	E	G	L	A	I	V	S	V	H	E	A	F	G	L	G	Q	-	-	-	-	-	-	-	-	E	F	N	R	H	L	L	Q	T	M	S