PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d3b8ma1  (  64 )    kwtSaAvVtpPepvqWqeLektFtkLrvldldikidrteAFnlFIkkFqs
d3b8oa1  (  55 )    ewsStAiTdrPtv-nLggYysqqqflrnld---vpsVdeAYkeFv-qLas
d4e29a-  (  56 )     wtStaiItqPdv-gIagynnAnviyg------aApvsdlqtLigrFssa
                      bbbbbbb        aaaa                     aa      

                             60        70        80        90        100 
d3b8ma1  ( 114 )    vslLeeyLrsspyVmdqe---ldlhraIvalSekMkAvddnaskkdepsl
d3b8oa1  ( 112 )    wdTrreFwlqTdyykqrvgnskadaallde-InnIqfipGdft------r
d4e29a-  ( 103 )    Fsalatld----------------------nqpeLtiepsv---------
                    aaaa                               bbb            

                             110       120       130       140       150 
d3b8ma1  ( 169 )    ytswtLsFtAp-tseeAqtVLsgYIdyIsalVv--kesIenVrnkleikt
d3b8oa1  ( 157 )    avndsVkLiAe-tapdAnnLLrqYVafAsqrAA--shlndeLkgaWaart
d4e29a-  ( 131 )    --pltVsYvgtagAqkLaqYIqqVddkVnqeLedlkdnialgrnlqdslt
                        bbbbb       aaaaaaaaaaaaaaaa   aaaaaaa  aaaa  

                             160       170       180       190       200 
d3b8ma1  ( 216 )    qfekeklaqdrikmknqldaniqrlnySldiAnaagikkpvykddpdfsi
d3b8oa1  ( 204 )    iq-kaqVkrqeevakaiydrr-nsieqq----------------------
d4e29a-  ( 185 )    qv----vaqqkdlrirqieealryAde-------akitqpqiq--tqdvt
                              aaaaaaaaaa                              

                             210       220       230       240       250 
d3b8ma1  ( 272 )    slGAdgIerkleiekavtdvaelngeLrnrqylveqLtkanIndv---nF
d3b8oa1  ( 267 )    --------arlenlqavgpa--fdldydqnr-alntlnvgptldp---rF
d4e29a-  ( 225 )    qdtfllGSdaLksin------------atrplafspayytkqlnlVtatV
                            aaaa                                      

                             260    
d3b8ma1  ( 319 )    tPFkyqlsPslp    
d3b8oa1  ( 304 )    qTYrylrtPeepvkrd
d4e29a-  ( 275 )    hVyryv--ptlpv--d
                       bb

Domains
Outliers

Domain ID	Name	Family	Source	STRING-DB
d3b8ma1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d3b8ma1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Enterochelin transport protein FepE	FepE-like	Escherichia coli [TaxId: 562]	view
d3b8oa1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d3b8oa1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Lipopolysaccharide biosynthesis protein WzzE	FepE-like	Escherichia coli [TaxId: 562]	view
d4e29a- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d4e29a- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	FepE-like	Shigella flexneri [TaxId: 623]	view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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E	W	S	S	T	A	I	T	D	R	P	T	V	-	N	L	G	G	Y	Y	S	Q	Q	Q	F	L	R	N	L	D	-	-	-	V	P	S	V	D	E	A	Y	K	E	F	V	-	Q	L	A	S	W	D	T	R	R	E	F	W	L	Q	T	D	Y	Y	K	Q	R	V	G	N	S	K	A	D	A	A	L	L	D	E	-	I	N	N	I	Q	F	I	P	G	D	F	T	-	-	-	-	-	-	R	A	V	N	D	S	V	K	L	I	A	E	-	T	A	P	D	A	N	N	L	L	R	Q	Y	V	A	F	A	S	Q	R	A	A	-	-	S	H	L	N	D	E	L	K	G	A	W	A	A	R	T	I	Q	-	K	A	Q	V	K	R	Q	E	E	V	A	K	A	I	Y	D	R	R	-	N	S	I	E	Q	Q	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	A	R	L	E	N	L	Q	A	V	G	P	A	-	-	F	D	L	D	Y	D	Q	N	R	-	A	L	N	T	L	N	V	G	P	T	L	D	P	-	-	-	R	F	Q	T	Y	R	Y	L	R	T	P	E	E	P	V	K	R	D
-	W	T	S	T	A	I	I	T	Q	P	D	V	-	G	I	A	G	Y	N	N	A	N	V	I	Y	G	-	-	-	-	-	-	A	A	P	V	S	D	L	Q	T	L	I	G	R	F	S	S	A	F	S	A	L	A	T	L	D	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	N	Q	P	E	L	T	I	E	P	S	V	-	-	-	-	-	-	-	-	-	-	-	P	L	T	V	S	Y	V	G	T	A	G	A	Q	K	L	A	Q	Y	I	Q	Q	V	D	D	K	V	N	Q	E	L	E	D	L	K	D	N	I	A	L	G	R	N	L	Q	D	S	L	T	Q	V	-	-	-	-	V	A	Q	Q	K	D	L	R	I	R	Q	I	E	E	A	L	R	Y	A	D	E	-	-	-	-	-	-	-	A	K	I	T	Q	P	Q	I	Q	-	-	T	Q	D	V	T	Q	D	T	F	L	L	G	S	D	A	L	K	S	I	N	-	-	-	-	-	-	-	-	-	-	-	-	A	T	R	P	L	A	F	S	P	A	Y	Y	T	K	Q	L	N	L	V	T	A	T	V	H	V	Y	R	Y	V	-	-	P	T	L	P	V	-	-	D

Member	Chain	UniProtKB	GO term

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K	W	T	S	A	A	V	V	T	P	P	E	P	V	Q	W	Q	E	L	E	K	T	F	T	K	L	R	V	L	D	L	D	I	K	I	D	R	T	E	A	F	N	L	F	I	K	K	F	Q	S	V	S	L	L	E	E	Y	L	R	S	S	P	Y	V	M	D	Q	E	-	-	-	L	D	L	H	R	A	I	V	A	L	S	E	K	M	K	A	V	D	D	N	A	S	K	K	D	E	P	S	L	Y	T	S	W	T	L	S	F	T	A	P	-	T	S	E	E	A	Q	T	V	L	S	G	Y	I	D	Y	I	S	A	L	V	V	-	-	K	E	S	I	E	N	V	R	N	K	L	E	I	K	T	Q	F	E	K	E	K	L	A	Q	D	R	I	K	M	K	N	Q	L	D	A	N	I	Q	R	L	N	Y	S	L	D	I	A	N	A	A	G	I	K	K	P	V	Y	K	D	D	P	D	F	S	I	S	L	G	A	D	G	I	E	R	K	L	E	I	E	K	A	V	T	D	V	A	E	L	N	G	E	L	R	N	R	Q	Y	L	V	E	Q	L	T	K	A	N	I	N	D	V	-	-	-	N	F	T	P	F	K	Y	Q	L	S	P	S	L	P	-	-	-	-
E	W	S	S	T	A	I	T	D	R	P	T	V	-	N	L	G	G	Y	Y	S	Q	Q	Q	F	L	R	N	L	D	-	-	-	V	P	S	V	D	E	A	Y	K	E	F	V	-	Q	L	A	S	W	D	T	R	R	E	F	W	L	Q	T	D	Y	Y	K	Q	R	V	G	N	S	K	A	D	A	A	L	L	D	E	-	I	N	N	I	Q	F	I	P	G	D	F	T	-	-	-	-	-	-	R	A	V	N	D	S	V	K	L	I	A	E	-	T	A	P	D	A	N	N	L	L	R	Q	Y	V	A	F	A	S	Q	R	A	A	-	-	S	H	L	N	D	E	L	K	G	A	W	A	A	R	T	I	Q	-	K	A	Q	V	K	R	Q	E	E	V	A	K	A	I	Y	D	R	R	-	N	S	I	E	Q	Q	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	A	R	L	E	N	L	Q	A	V	G	P	A	-	-	F	D	L	D	Y	D	Q	N	R	-	A	L	N	T	L	N	V	G	P	T	L	D	P	-	-	-	R	F	Q	T	Y	R	Y	L	R	T	P	E	E	P	V	K	R	D
-	W	T	S	T	A	I	I	T	Q	P	D	V	-	G	I	A	G	Y	N	N	A	N	V	I	Y	G	-	-	-	-	-	-	A	A	P	V	S	D	L	Q	T	L	I	G	R	F	S	S	A	F	S	A	L	A	T	L	D	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	N	Q	P	E	L	T	I	E	P	S	V	-	-	-	-	-	-	-	-	-	-	-	P	L	T	V	S	Y	V	G	T	A	G	A	Q	K	L	A	Q	Y	I	Q	Q	V	D	D	K	V	N	Q	E	L	E	D	L	K	D	N	I	A	L	G	R	N	L	Q	D	S	L	T	Q	V	-	-	-	-	V	A	Q	Q	K	D	L	R	I	R	Q	I	E	E	A	L	R	Y	A	D	E	-	-	-	-	-	-	-	A	K	I	T	Q	P	Q	I	Q	-	-	T	Q	D	V	T	Q	D	T	F	L	L	G	S	D	A	L	K	S	I	N	-	-	-	-	-	-	-	-	-	-	-	-	A	T	R	P	L	A	F	S	P	A	Y	Y	T	K	Q	L	N	L	V	T	A	T	V	H	V	Y	R	Y	V	-	-	P	T	L	P	V	-	-	D

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K	W	T	S	A	A	V	V	T	P	P	E	P	V	Q	W	Q	E	L	E	K	T	F	T	K	L	R	V	L	D	L	D	I	K	I	D	R	T	E	A	F	N	L	F	I	K	K	F	Q	S	V	S	L	L	E	E	Y	L	R	S	S	P	Y	V	M	D	Q	E	-	-	-	L	D	L	H	R	A	I	V	A	L	S	E	K	M	K	A	V	D	D	N	A	S	K	K	D	E	P	S	L	Y	T	S	W	T	L	S	F	T	A	P	-	T	S	E	E	A	Q	T	V	L	S	G	Y	I	D	Y	I	S	A	L	V	V	-	-	K	E	S	I	E	N	V	R	N	K	L	E	I	K	T	Q	F	E	K	E	K	L	A	Q	D	R	I	K	M	K	N	Q	L	D	A	N	I	Q	R	L	N	Y	S	L	D	I	A	N	A	A	G	I	K	K	P	V	Y	K	D	D	P	D	F	S	I	S	L	G	A	D	G	I	E	R	K	L	E	I	E	K	A	V	T	D	V	A	E	L	N	G	E	L	R	N	R	Q	Y	L	V	E	Q	L	T	K	A	N	I	N	D	V	-	-	-	N	F	T	P	F	K	Y	Q	L	S	P	S	L	P	-	-	-	-
E	W	S	S	T	A	I	T	D	R	P	T	V	-	N	L	G	G	Y	Y	S	Q	Q	Q	F	L	R	N	L	D	-	-	-	V	P	S	V	D	E	A	Y	K	E	F	V	-	Q	L	A	S	W	D	T	R	R	E	F	W	L	Q	T	D	Y	Y	K	Q	R	V	G	N	S	K	A	D	A	A	L	L	D	E	-	I	N	N	I	Q	F	I	P	G	D	F	T	-	-	-	-	-	-	R	A	V	N	D	S	V	K	L	I	A	E	-	T	A	P	D	A	N	N	L	L	R	Q	Y	V	A	F	A	S	Q	R	A	A	-	-	S	H	L	N	D	E	L	K	G	A	W	A	A	R	T	I	Q	-	K	A	Q	V	K	R	Q	E	E	V	A	K	A	I	Y	D	R	R	-	N	S	I	E	Q	Q	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	A	R	L	E	N	L	Q	A	V	G	P	A	-	-	F	D	L	D	Y	D	Q	N	R	-	A	L	N	T	L	N	V	G	P	T	L	D	P	-	-	-	R	F	Q	T	Y	R	Y	L	R	T	P	E	E	P	V	K	R	D
-	W	T	S	T	A	I	I	T	Q	P	D	V	-	G	I	A	G	Y	N	N	A	N	V	I	Y	G	-	-	-	-	-	-	A	A	P	V	S	D	L	Q	T	L	I	G	R	F	S	S	A	F	S	A	L	A	T	L	D	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	N	Q	P	E	L	T	I	E	P	S	V	-	-	-	-	-	-	-	-	-	-	-	P	L	T	V	S	Y	V	G	T	A	G	A	Q	K	L	A	Q	Y	I	Q	Q	V	D	D	K	V	N	Q	E	L	E	D	L	K	D	N	I	A	L	G	R	N	L	Q	D	S	L	T	Q	V	-	-	-	-	V	A	Q	Q	K	D	L	R	I	R	Q	I	E	E	A	L	R	Y	A	D	E	-	-	-	-	-	-	-	A	K	I	T	Q	P	Q	I	Q	-	-	T	Q	D	V	T	Q	D	T	F	L	L	G	S	D	A	L	K	S	I	N	-	-	-	-	-	-	-	-	-	-	-	-	A	T	R	P	L	A	F	S	P	A	Y	Y	T	K	Q	L	N	L	V	T	A	T	V	H	V	Y	R	Y	V	-	-	P	T	L	P	V	-	-	D

									10										20										30										40										50										60										70										80										90										100										110										120										130										140										150										160										170										180										190										200										210										220										230										240										250										260
K	W	T	S	A	A	V	V	T	P	P	E	P	V	Q	W	Q	E	L	E	K	T	F	T	K	L	R	V	L	D	L	D	I	K	I	D	R	T	E	A	F	N	L	F	I	K	K	F	Q	S	V	S	L	L	E	E	Y	L	R	S	S	P	Y	V	M	D	Q	E	-	-	-	L	D	L	H	R	A	I	V	A	L	S	E	K	M	K	A	V	D	D	N	A	S	K	K	D	E	P	S	L	Y	T	S	W	T	L	S	F	T	A	P	-	T	S	E	E	A	Q	T	V	L	S	G	Y	I	D	Y	I	S	A	L	V	V	-	-	K	E	S	I	E	N	V	R	N	K	L	E	I	K	T	Q	F	E	K	E	K	L	A	Q	D	R	I	K	M	K	N	Q	L	D	A	N	I	Q	R	L	N	Y	S	L	D	I	A	N	A	A	G	I	K	K	P	V	Y	K	D	D	P	D	F	S	I	S	L	G	A	D	G	I	E	R	K	L	E	I	E	K	A	V	T	D	V	A	E	L	N	G	E	L	R	N	R	Q	Y	L	V	E	Q	L	T	K	A	N	I	N	D	V	-	-	-	N	F	T	P	F	K	Y	Q	L	S	P	S	L	P	-	-	-	-
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