PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d3bypa1  (   6 )    gLppeeverIrafLqrirgrAlevhdLkTrragprsfLeFhLvVrgdtpv
d3h90a2  ( 209 )    aLpdeerqeIidiVtswp-gVsgAhdlrTrqsgptrfIqIhLeMedslpl
                       aaaaaaaaaaa        bbbbbbbbbb  bbbbbbbbb      a

                             60        70        80  
d3bypa1  (  57 )    eeahrLcdeLeraLaqafpgLqAtIhvepeg  
d3h90a2  ( 258 )    vqahmvAdqVeqaIlrrFpgSdViIhqdpcsvv
                    aaaaaaaaaaaaaaaaa    bbbbbbb

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d3bypa1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d3bypa1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Putative Zinc transporter CzrB	Cation efflux protein cytoplasmic domain-like	Thermus thermophilus [TaxId: 274]		view
d3h90a2 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d3h90a2 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Escherichia coli K-12 [TaxId: 83333]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

									10										20										30										40										50										60										70										80
G	L	P	P	E	E	V	E	R	I	R	A	F	L	Q	R	I	R	G	R	A	L	E	V	H	D	L	K	T	R	R	A	G	P	R	S	F	L	E	F	H	L	V	V	R	G	D	T	P	V	E	E	A	H	R	L	C	D	E	L	E	R	A	L	A	Q	A	F	P	G	L	Q	A	T	I	H	V	E	P	E	G	-	-
A	L	P	D	E	E	R	Q	E	I	I	D	I	V	T	S	W	P	-	G	V	S	G	A	H	D	L	R	T	R	Q	S	G	P	T	R	F	I	Q	I	H	L	E	M	E	D	S	L	P	L	V	Q	A	H	M	V	A	D	Q	V	E	Q	A	I	L	R	R	F	P	G	S	D	V	I	I	H	Q	D	P	C	S	V	V

Member	Chain	UniProtKB	GO term

									10										20										30										40										50										60										70										80
G	L	P	P	E	E	V	E	R	I	R	A	F	L	Q	R	I	R	G	R	A	L	E	V	H	D	L	K	T	R	R	A	G	P	R	S	F	L	E	F	H	L	V	V	R	G	D	T	P	V	E	E	A	H	R	L	C	D	E	L	E	R	A	L	A	Q	A	F	P	G	L	Q	A	T	I	H	V	E	P	E	G	-	-
A	L	P	D	E	E	R	Q	E	I	I	D	I	V	T	S	W	P	-	G	V	S	G	A	H	D	L	R	T	R	Q	S	G	P	T	R	F	I	Q	I	H	L	E	M	E	D	S	L	P	L	V	Q	A	H	M	V	A	D	Q	V	E	Q	A	I	L	R	R	F	P	G	S	D	V	I	I	H	Q	D	P	C	S	V	V

									10										20										30										40										50										60										70										80
G	L	P	P	E	E	V	E	R	I	R	A	F	L	Q	R	I	R	G	R	A	L	E	V	H	D	L	K	T	R	R	A	G	P	R	S	F	L	E	F	H	L	V	V	R	G	D	T	P	V	E	E	A	H	R	L	C	D	E	L	E	R	A	L	A	Q	A	F	P	G	L	Q	A	T	I	H	V	E	P	E	G	-	-
A	L	P	D	E	E	R	Q	E	I	I	D	I	V	T	S	W	P	-	G	V	S	G	A	H	D	L	R	T	R	Q	S	G	P	T	R	F	I	Q	I	H	L	E	M	E	D	S	L	P	L	V	Q	A	H	M	V	A	D	Q	V	E	Q	A	I	L	R	R	F	P	G	S	D	V	I	I	H	Q	D	P	C	S	V	V

									10										20										30										40										50										60										70										80
G	L	P	P	E	E	V	E	R	I	R	A	F	L	Q	R	I	R	G	R	A	L	E	V	H	D	L	K	T	R	R	A	G	P	R	S	F	L	E	F	H	L	V	V	R	G	D	T	P	V	E	E	A	H	R	L	C	D	E	L	E	R	A	L	A	Q	A	F	P	G	L	Q	A	T	I	H	V	E	P	E	G	-	-
A	L	P	D	E	E	R	Q	E	I	I	D	I	V	T	S	W	P	-	G	V	S	G	A	H	D	L	R	T	R	Q	S	G	P	T	R	F	I	Q	I	H	L	E	M	E	D	S	L	P	L	V	Q	A	H	M	V	A	D	Q	V	E	Q	A	I	L	R	R	F	P	G	S	D	V	I	I	H	Q	D	P	C	S	V	V