PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d2g7ja1  (   1 )    mylrpdevarvlekagFtvdvvtnktyGYrrgenyvYvnreArmgrtAli
d2od0a1  (   3 )    k--pilkdSklFeaLgtiksrs-fggfgLfAdetFALVvn------nqLH
                        aaaa          bbb     bbbbb  bbbbbb         bb

                             60        70        80        90        100 
d2g7ja1  (  51 )    ihprlkdrSsslAdpasdiktc----dhYqnfplylgget-hehyGiPHg
d2od0a1  (  47 )    irad-qqtssdfetqglkPyvykkrg-------------fpvvtkyyais
                         aaaa           b                        b b  

                             110       120 
d2g7ja1  (  96 )    fs---srialerylnglFgd   
d2od0a1  (  83 )    selwessdrLievAkkslenAkl
                          aaaaaaaaaaa

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d2g7ja1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2g7ja1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Putative cytoplasmic protein YgaC	YgaC-like	Salmonella typhimurium [TaxId: 90371]		view
d2od0a1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2od0a1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Hypothetical protein VP1028	TfoX N-terminal domain-like	Vibrio parahaemolyticus [TaxId: 670]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

									10										20										30										40										50										60										70										80										90										100										110										120
M	Y	L	R	P	D	E	V	A	R	V	L	E	K	A	G	F	T	V	D	V	V	T	N	K	T	Y	G	Y	R	R	G	E	N	Y	V	Y	V	N	R	E	A	R	M	G	R	T	A	L	I	I	H	P	R	L	K	D	R	S	S	S	L	A	D	P	A	S	D	I	K	T	C	-	-	-	-	D	H	Y	Q	N	F	P	L	Y	L	G	G	E	T	-	H	E	H	Y	G	I	P	H	G	F	S	-	-	-	S	R	I	A	L	E	R	Y	L	N	G	L	F	G	D	-	-	-
K	-	-	P	I	L	K	D	S	K	L	F	E	A	L	G	T	I	K	S	R	S	-	F	G	G	F	G	L	F	A	D	E	T	F	A	L	V	V	N	-	-	-	-	-	-	N	Q	L	H	I	R	A	D	-	Q	Q	T	S	S	D	F	E	T	Q	G	L	K	P	Y	V	Y	K	K	R	G	-	-	-	-	-	-	-	-	-	-	-	-	-	F	P	V	V	T	K	Y	Y	A	I	S	S	E	L	W	E	S	S	D	R	L	I	E	V	A	K	K	S	L	E	N	A	K	L

Member	Chain	UniProtKB	GO term

									10										20										30										40										50										60										70										80										90										100										110										120
M	Y	L	R	P	D	E	V	A	R	V	L	E	K	A	G	F	T	V	D	V	V	T	N	K	T	Y	G	Y	R	R	G	E	N	Y	V	Y	V	N	R	E	A	R	M	G	R	T	A	L	I	I	H	P	R	L	K	D	R	S	S	S	L	A	D	P	A	S	D	I	K	T	C	-	-	-	-	D	H	Y	Q	N	F	P	L	Y	L	G	G	E	T	-	H	E	H	Y	G	I	P	H	G	F	S	-	-	-	S	R	I	A	L	E	R	Y	L	N	G	L	F	G	D	-	-	-
K	-	-	P	I	L	K	D	S	K	L	F	E	A	L	G	T	I	K	S	R	S	-	F	G	G	F	G	L	F	A	D	E	T	F	A	L	V	V	N	-	-	-	-	-	-	N	Q	L	H	I	R	A	D	-	Q	Q	T	S	S	D	F	E	T	Q	G	L	K	P	Y	V	Y	K	K	R	G	-	-	-	-	-	-	-	-	-	-	-	-	-	F	P	V	V	T	K	Y	Y	A	I	S	S	E	L	W	E	S	S	D	R	L	I	E	V	A	K	K	S	L	E	N	A	K	L

									10										20										30										40										50										60										70										80										90										100										110										120
M	Y	L	R	P	D	E	V	A	R	V	L	E	K	A	G	F	T	V	D	V	V	T	N	K	T	Y	G	Y	R	R	G	E	N	Y	V	Y	V	N	R	E	A	R	M	G	R	T	A	L	I	I	H	P	R	L	K	D	R	S	S	S	L	A	D	P	A	S	D	I	K	T	C	-	-	-	-	D	H	Y	Q	N	F	P	L	Y	L	G	G	E	T	-	H	E	H	Y	G	I	P	H	G	F	S	-	-	-	S	R	I	A	L	E	R	Y	L	N	G	L	F	G	D	-	-	-
K	-	-	P	I	L	K	D	S	K	L	F	E	A	L	G	T	I	K	S	R	S	-	F	G	G	F	G	L	F	A	D	E	T	F	A	L	V	V	N	-	-	-	-	-	-	N	Q	L	H	I	R	A	D	-	Q	Q	T	S	S	D	F	E	T	Q	G	L	K	P	Y	V	Y	K	K	R	G	-	-	-	-	-	-	-	-	-	-	-	-	-	F	P	V	V	T	K	Y	Y	A	I	S	S	E	L	W	E	S	S	D	R	L	I	E	V	A	K	K	S	L	E	N	A	K	L

									10										20										30										40										50										60										70										80										90										100										110										120
M	Y	L	R	P	D	E	V	A	R	V	L	E	K	A	G	F	T	V	D	V	V	T	N	K	T	Y	G	Y	R	R	G	E	N	Y	V	Y	V	N	R	E	A	R	M	G	R	T	A	L	I	I	H	P	R	L	K	D	R	S	S	S	L	A	D	P	A	S	D	I	K	T	C	-	-	-	-	D	H	Y	Q	N	F	P	L	Y	L	G	G	E	T	-	H	E	H	Y	G	I	P	H	G	F	S	-	-	-	S	R	I	A	L	E	R	Y	L	N	G	L	F	G	D	-	-	-
K	-	-	P	I	L	K	D	S	K	L	F	E	A	L	G	T	I	K	S	R	S	-	F	G	G	F	G	L	F	A	D	E	T	F	A	L	V	V	N	-	-	-	-	-	-	N	Q	L	H	I	R	A	D	-	Q	Q	T	S	S	D	F	E	T	Q	G	L	K	P	Y	V	Y	K	K	R	G	-	-	-	-	-	-	-	-	-	-	-	-	-	F	P	V	V	T	K	Y	Y	A	I	S	S	E	L	W	E	S	S	D	R	L	I	E	V	A	K	K	S	L	E	N	A	K	L