PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d2w6ka1  (   2 )    plpipslLIAGIgcrrgcsAehLralLerTLgehgrslaeLdALASidgk
d3by5a1  (   8 )          vtVAGIgcrkgaasdaIiaAVraAerafgvt---VdyLATaplk
d3eeqa1  ( 215 )          kISIGIgSk-dVkmeeIrdGIykVLerlnlk-rrIgIIASir--
                            bbbbb      aaaaaaaaaaaaaa         bbbb    

                             60        70        80        90        100 
d2w6ka1  (  52 )    rdepgLrqLatllerpvhflapavLhdye-prLlspsavalretgCsSvA
d3by5a1  (  49 )    adeagLaeAakgLslsleiVaqerLeava-aeTtf-sqasLdhsgsPsvs
d3eeqa1  ( 257 )    ---eeVk-IAdeFnvrFrlVneeeinnfmnpcltpps---------tgvA
                             aaa    bbb  aaaaa                      aa

                             110       120       130       
d2w6ka1  ( 101 )    EAAALALAerlGggrAdLLgakrsddrAsIALArllter
d3by5a1  (  98 )    EAAALAAAga----gArLvAprlvvgdVtVAIAtsd   
d3eeqa1  ( 303 )    EiSALiAGg------nSLilrkia--iStIAVAtye   
                    aaaaaaaa              bb    bbbbb

Domains
Outliers

Domain ID	Name	Family	Source	STRING-DB
d2w6ka1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2w6ka1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Cobalamin biosynthesis protein CobE	CobE/GbiG C-terminal domain-like	Pseudomonas aeruginosa [TaxId: 287]	view
d3by5a1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d3by5a1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Cobalamin biosynthesis protein CobE	CobE/GbiG C-terminal domain-like	Agrobacterium tumefaciens [TaxId: 358]	view
d3eeqa1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d3eeqa1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Cobalamin biosynthesis protein G, CbiG	CobE/GbiG C-terminal domain-like	Sulfolobus solfataricus [TaxId: 2287]	view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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Member	Chain	UniProtKB	GO term
d2w6ka1	A	Q9HZQ0	GO:0009236
d3by5a1	A	A9CHC6	GO:0009236
d3eeqa1	A	Q97WD0	GO:0009236

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