PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d2d00a1  (   6 )        mAvIAdpetAqgfrla--------gl-eGygAs---saeeAqslle
d2i4ra1  (   4 )        lAVVGdpdfTigf-la--------gisdiyeVt---sdeeIvkave
d6wlzn-  (   4 )    rgkliAVIGdedtvtgfllggiGelnknrhpnflvvekdttineIedtfr
                         bbb  aaaaa                          aaaaaaaaa

                             60        70        80        90        100 
d2d00a1  (  40 )    tLverggyalvaVdeallpdperAverlm--rgrdlpvllpiaglkeAfq
d2i4ra1  (  39 )    dVlkrddVgvVik-qeykklpp--vlrid--kptfvsvg           
d6wlzn-  (  54 )    qflnrddigiIliNQyIAemVrhaLdahqqsipavleipskehpydaa--
                    aaaa      bb                                      

                             110       120 
d2d00a1  (  88 )    ghdvegymrelvrktigfdikl
d2i4ra1                                   
d6wlzn-  ( 102 )    -kDsilrrargmf

Domains
Outliers

Domain ID	Name	Family	Source	STRING-DB
d2d00a1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2d00a1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	V-type ATP synthase subunit F, AtpF	AtpF-like	Thermus thermophilus [TaxId: 274]	view
d2i4ra1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2i4ra1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	V-type ATP synthase subunit F, AtpF	AtpF-like	Archaeoglobus fulgidus [TaxId: 2234]	view
d6wlzn- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d6wlzn- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Human (Homo sapiens) [TaxId: 9606]	view

Domain ID	Name
d2qaia-	2qai A:

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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-	-	-	-	M	A	V	I	A	D	P	E	T	A	Q	G	F	R	L	A	-	-	-	-	-	-	-	-	G	L	-	E	G	Y	G	A	S	-	-	-	S	A	E	E	A	Q	S	L	L	E	T	L	V	E	R	G	G	Y	A	L	V	A	V	D	E	A	L	L	P	D	P	E	R	A	V	E	R	L	M	-	-	R	G	R	D	L	P	V	L	L	P	I	A	G	L	K	E	A	F	Q	G	H	D	V	E	G	Y	M	R	E	L	V	R	K	T	I	G	F	D	I	K	L
-	-	-	-	L	A	V	V	G	D	P	D	F	T	I	G	F	-	L	A	-	-	-	-	-	-	-	-	G	I	S	D	I	Y	E	V	T	-	-	-	S	D	E	E	I	V	K	A	V	E	D	V	L	K	R	D	D	V	G	V	V	I	K	-	Q	E	Y	K	K	L	P	P	-	-	V	L	R	I	D	-	-	K	P	T	F	V	S	V	G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
R	G	K	L	I	A	V	I	G	D	E	D	T	V	T	G	F	L	L	G	G	I	G	E	L	N	K	N	R	H	P	N	F	L	V	V	E	K	D	T	T	I	N	E	I	E	D	T	F	R	Q	F	L	N	R	D	D	I	G	I	I	L	I	N	Q	Y	I	A	E	M	V	R	H	A	L	D	A	H	Q	Q	S	I	P	A	V	L	E	I	P	S	K	E	H	P	Y	D	A	A	-	-	-	K	D	S	I	L	R	R	A	R	G	M	F	-	-	-	-	-	-	-	-	-

Member	Chain	UniProtKB	GO term
d2d00a1	A	P74903	GO:0005524
d2d00a1	A	P74903	GO:0006754
d2d00a1	A	P74903	GO:0034220
d2d00a1	A	P74903	GO:0042777
d2d00a1	A	P74903	GO:0046933
d2d00a1	A	P74903	GO:0046961
d2d00a1	A	P74903	GO:1902600
d2i4ra1	A	O29102	GO:0005524
d2i4ra1	A	O29102	GO:0006754
d2i4ra1	A	O29102	GO:0034220
d2i4ra1	A	O29102	GO:0042777
d2i4ra1	A	O29102	GO:0046933
d2i4ra1	A	O29102	GO:0046961
d2i4ra1	A	O29102	GO:1902600

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-	-	-	-	L	A	V	V	G	D	P	D	F	T	I	G	F	-	L	A	-	-	-	-	-	-	-	-	G	I	S	D	I	Y	E	V	T	-	-	-	S	D	E	E	I	V	K	A	V	E	D	V	L	K	R	D	D	V	G	V	V	I	K	-	Q	E	Y	K	K	L	P	P	-	-	V	L	R	I	D	-	-	K	P	T	F	V	S	V	G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
R	G	K	L	I	A	V	I	G	D	E	D	T	V	T	G	F	L	L	G	G	I	G	E	L	N	K	N	R	H	P	N	F	L	V	V	E	K	D	T	T	I	N	E	I	E	D	T	F	R	Q	F	L	N	R	D	D	I	G	I	I	L	I	N	Q	Y	I	A	E	M	V	R	H	A	L	D	A	H	Q	Q	S	I	P	A	V	L	E	I	P	S	K	E	H	P	Y	D	A	A	-	-	-	K	D	S	I	L	R	R	A	R	G	M	F	-	-	-	-	-	-	-	-	-

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-	-	-	-	M	A	V	I	A	D	P	E	T	A	Q	G	F	R	L	A	-	-	-	-	-	-	-	-	G	L	-	E	G	Y	G	A	S	-	-	-	S	A	E	E	A	Q	S	L	L	E	T	L	V	E	R	G	G	Y	A	L	V	A	V	D	E	A	L	L	P	D	P	E	R	A	V	E	R	L	M	-	-	R	G	R	D	L	P	V	L	L	P	I	A	G	L	K	E	A	F	Q	G	H	D	V	E	G	Y	M	R	E	L	V	R	K	T	I	G	F	D	I	K	L
-	-	-	-	L	A	V	V	G	D	P	D	F	T	I	G	F	-	L	A	-	-	-	-	-	-	-	-	G	I	S	D	I	Y	E	V	T	-	-	-	S	D	E	E	I	V	K	A	V	E	D	V	L	K	R	D	D	V	G	V	V	I	K	-	Q	E	Y	K	K	L	P	P	-	-	V	L	R	I	D	-	-	K	P	T	F	V	S	V	G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
R	G	K	L	I	A	V	I	G	D	E	D	T	V	T	G	F	L	L	G	G	I	G	E	L	N	K	N	R	H	P	N	F	L	V	V	E	K	D	T	T	I	N	E	I	E	D	T	F	R	Q	F	L	N	R	D	D	I	G	I	I	L	I	N	Q	Y	I	A	E	M	V	R	H	A	L	D	A	H	Q	Q	S	I	P	A	V	L	E	I	P	S	K	E	H	P	Y	D	A	A	-	-	-	K	D	S	I	L	R	R	A	R	G	M	F	-	-	-	-	-	-	-	-	-

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-	-	-	-	L	A	V	V	G	D	P	D	F	T	I	G	F	-	L	A	-	-	-	-	-	-	-	-	G	I	S	D	I	Y	E	V	T	-	-	-	S	D	E	E	I	V	K	A	V	E	D	V	L	K	R	D	D	V	G	V	V	I	K	-	Q	E	Y	K	K	L	P	P	-	-	V	L	R	I	D	-	-	K	P	T	F	V	S	V	G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
R	G	K	L	I	A	V	I	G	D	E	D	T	V	T	G	F	L	L	G	G	I	G	E	L	N	K	N	R	H	P	N	F	L	V	V	E	K	D	T	T	I	N	E	I	E	D	T	F	R	Q	F	L	N	R	D	D	I	G	I	I	L	I	N	Q	Y	I	A	E	M	V	R	H	A	L	D	A	H	Q	Q	S	I	P	A	V	L	E	I	P	S	K	E	H	P	Y	D	A	A	-	-	-	K	D	S	I	L	R	R	A	R	G	M	F	-	-	-	-	-	-	-	-	-