PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d2ooja1  (   2 )    e-tkvtgkFdvltpenayatgvggvnlgr-aldktFygeLeA-Sqge-ls
d2q03a1  (   5 )    tkqtiigFqitawdetsyfes--gaklTqAvItQsYqgvLqghSeIryls
                       bbbbbbb                     bbbbb     b bbbb bb

                             60        70        80        90        100 
d2ooja1  (  53 )    atavgsagyvaiEqVvgLcgrqgsFvlqhfgitd----rlhleVvphsGa
d2q03a1  (  58 )    yqdnanatfvgfEhFtgsLg-kgsFiLqHkGlfaagvasSeFeLv-rsAt
                    b      bbbbbbbbbb      bbbbbbbb        bbbbb      

                             110       120       
d2ooja1  ( 106 )    g-eLtgL-gtaisie--gqhfYeFsFcfp
d2q03a1  ( 109 )    -gdFvhLvgghfvstengqAnYqItLqd 
                              bbbb     bbbbbb

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d2ooja1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2ooja1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Hypothetical protein SO1590	SO1590-like	Shewanella oneidensis [TaxId: 70863]		view
d2q03a1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2q03a1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Uncharacterized protein Sden_2034	SO1590-like	Shewanella denitrificans [TaxId: 192073]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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E	-	T	K	V	T	G	K	F	D	V	L	T	P	E	N	A	Y	A	T	G	V	G	G	V	N	L	G	R	-	A	L	D	K	T	F	Y	G	E	L	E	A	-	S	Q	G	E	-	L	S	A	T	A	V	G	S	A	G	Y	V	A	I	E	Q	V	V	G	L	C	G	R	Q	G	S	F	V	L	Q	H	F	G	I	T	D	-	-	-	-	R	L	H	L	E	V	V	P	H	S	G	A	G	-	E	L	T	G	L	-	G	T	A	I	S	I	E	-	-	G	Q	H	F	Y	E	F	S	F	C	F	P
T	K	Q	T	I	I	G	F	Q	I	T	A	W	D	E	T	S	Y	F	E	S	-	-	G	A	K	L	T	Q	A	V	I	T	Q	S	Y	Q	G	V	L	Q	G	H	S	E	I	R	Y	L	S	Y	Q	D	N	A	N	A	T	F	V	G	F	E	H	F	T	G	S	L	G	-	K	G	S	F	I	L	Q	H	K	G	L	F	A	A	G	V	A	S	S	E	F	E	L	V	-	R	S	A	T	-	G	D	F	V	H	L	V	G	G	H	F	V	S	T	E	N	G	Q	A	N	Y	Q	I	T	L	Q	D	-

Member	Chain	UniProtKB	GO term
d2ooja1	A	Q8EGL1	GO:0003674
d2ooja1	A	Q8EGL1	GO:0005575
d2ooja1	A	Q8EGL1	GO:0008150

									10										20										30										40										50										60										70										80										90										100										110										120
E	-	T	K	V	T	G	K	F	D	V	L	T	P	E	N	A	Y	A	T	G	V	G	G	V	N	L	G	R	-	A	L	D	K	T	F	Y	G	E	L	E	A	-	S	Q	G	E	-	L	S	A	T	A	V	G	S	A	G	Y	V	A	I	E	Q	V	V	G	L	C	G	R	Q	G	S	F	V	L	Q	H	F	G	I	T	D	-	-	-	-	R	L	H	L	E	V	V	P	H	S	G	A	G	-	E	L	T	G	L	-	G	T	A	I	S	I	E	-	-	G	Q	H	F	Y	E	F	S	F	C	F	P
T	K	Q	T	I	I	G	F	Q	I	T	A	W	D	E	T	S	Y	F	E	S	-	-	G	A	K	L	T	Q	A	V	I	T	Q	S	Y	Q	G	V	L	Q	G	H	S	E	I	R	Y	L	S	Y	Q	D	N	A	N	A	T	F	V	G	F	E	H	F	T	G	S	L	G	-	K	G	S	F	I	L	Q	H	K	G	L	F	A	A	G	V	A	S	S	E	F	E	L	V	-	R	S	A	T	-	G	D	F	V	H	L	V	G	G	H	F	V	S	T	E	N	G	Q	A	N	Y	Q	I	T	L	Q	D	-

									10										20										30										40										50										60										70										80										90										100										110										120
E	-	T	K	V	T	G	K	F	D	V	L	T	P	E	N	A	Y	A	T	G	V	G	G	V	N	L	G	R	-	A	L	D	K	T	F	Y	G	E	L	E	A	-	S	Q	G	E	-	L	S	A	T	A	V	G	S	A	G	Y	V	A	I	E	Q	V	V	G	L	C	G	R	Q	G	S	F	V	L	Q	H	F	G	I	T	D	-	-	-	-	R	L	H	L	E	V	V	P	H	S	G	A	G	-	E	L	T	G	L	-	G	T	A	I	S	I	E	-	-	G	Q	H	F	Y	E	F	S	F	C	F	P
T	K	Q	T	I	I	G	F	Q	I	T	A	W	D	E	T	S	Y	F	E	S	-	-	G	A	K	L	T	Q	A	V	I	T	Q	S	Y	Q	G	V	L	Q	G	H	S	E	I	R	Y	L	S	Y	Q	D	N	A	N	A	T	F	V	G	F	E	H	F	T	G	S	L	G	-	K	G	S	F	I	L	Q	H	K	G	L	F	A	A	G	V	A	S	S	E	F	E	L	V	-	R	S	A	T	-	G	D	F	V	H	L	V	G	G	H	F	V	S	T	E	N	G	Q	A	N	Y	Q	I	T	L	Q	D	-

									10										20										30										40										50										60										70										80										90										100										110										120
E	-	T	K	V	T	G	K	F	D	V	L	T	P	E	N	A	Y	A	T	G	V	G	G	V	N	L	G	R	-	A	L	D	K	T	F	Y	G	E	L	E	A	-	S	Q	G	E	-	L	S	A	T	A	V	G	S	A	G	Y	V	A	I	E	Q	V	V	G	L	C	G	R	Q	G	S	F	V	L	Q	H	F	G	I	T	D	-	-	-	-	R	L	H	L	E	V	V	P	H	S	G	A	G	-	E	L	T	G	L	-	G	T	A	I	S	I	E	-	-	G	Q	H	F	Y	E	F	S	F	C	F	P
T	K	Q	T	I	I	G	F	Q	I	T	A	W	D	E	T	S	Y	F	E	S	-	-	G	A	K	L	T	Q	A	V	I	T	Q	S	Y	Q	G	V	L	Q	G	H	S	E	I	R	Y	L	S	Y	Q	D	N	A	N	A	T	F	V	G	F	E	H	F	T	G	S	L	G	-	K	G	S	F	I	L	Q	H	K	G	L	F	A	A	G	V	A	S	S	E	F	E	L	V	-	R	S	A	T	-	G	D	F	V	H	L	V	G	G	H	F	V	S	T	E	N	G	Q	A	N	Y	Q	I	T	L	Q	D	-