PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d2rcfa1  (   1 )    mkiMqVektlvstnriadmgh--kplLvVwekpgap----rqvAVDaigC
d4jw0a-  (   1 )    mqiGrvrgtvvssqkepsmvgvkflllqlide-agqplpqyevAaDgvgA
d5l37a-  (   1 )    mlrAtVtgnvwstrriegipa--gafleVevegtgs----rmiAFDvlgS
d6jy5a-  (   1 )    mevmrVrsdliatrripglkn--islrvMeda-tgk----vsvACDpigV
                     bbbbbbbb                bbbbb          bbbbbb    

                             60        70        80        90     
d2rcfa1  (  45 )    ipgdwVlCvgssaAreaAgsksypsdlTIigiidqwng        
d4jw0a-  (  50 )    gldewvlFsrgsaArqvagsekrpvdAvvigiidtvsvdnrplysk
d5l37a-  (  45 )    gvgehVlIaqgsvAsswftgtpPpidALIigsid            
d6jy5a-  (  44 )    pegcwVfTisgsaArf----geiltdlTIggiid            
                        bbbbbb                bbbbbb

Domains
Outliers

Domain ID	Name	Family	Source	STRING-DB
d2rcfa1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2rcfa1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Carboxysome shell protein	EutN/CcmL-like	Thiobacillus neapolitanus [TaxId: 927]	view
d4jw0a- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d4jw0a- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	EutN/CcmL-like	Gloeobacter violaceus [TaxId: 251221]	view
d5l37a- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d5l37a- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Mycobacterium smegmatis [TaxId: 246196]	view
d6jy5a- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d6jy5a- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Halothiobacillus neapolitanus [TaxId: 927]	view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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M	K	I	M	Q	V	E	K	T	L	V	S	T	N	R	I	A	D	M	G	H	-	-	K	P	L	L	V	V	W	E	K	P	G	A	P	-	-	-	-	R	Q	V	A	V	D	A	I	G	C	I	P	G	D	W	V	L	C	V	G	S	S	A	A	R	E	A	A	G	S	K	S	Y	P	S	D	L	T	I	I	G	I	I	D	Q	W	N	G	-	-	-	-	-	-	-	-
M	Q	I	G	R	V	R	G	T	V	V	S	S	Q	K	E	P	S	M	V	G	V	K	F	L	L	L	Q	L	I	D	E	-	A	G	Q	P	L	P	Q	Y	E	V	A	A	D	G	V	G	A	G	L	D	E	W	V	L	F	S	R	G	S	A	A	R	Q	V	A	G	S	E	K	R	P	V	D	A	V	V	I	G	I	I	D	T	V	S	V	D	N	R	P	L	Y	S	K
M	L	R	A	T	V	T	G	N	V	W	S	T	R	R	I	E	G	I	P	A	-	-	G	A	F	L	E	V	E	V	E	G	T	G	S	-	-	-	-	R	M	I	A	F	D	V	L	G	S	G	V	G	E	H	V	L	I	A	Q	G	S	V	A	S	S	W	F	T	G	T	P	P	P	I	D	A	L	I	I	G	S	I	D	-	-	-	-	-	-	-	-	-	-	-	-
M	E	V	M	R	V	R	S	D	L	I	A	T	R	R	I	P	G	L	K	N	-	-	I	S	L	R	V	M	E	D	A	-	T	G	K	-	-	-	-	V	S	V	A	C	D	P	I	G	V	P	E	G	C	W	V	F	T	I	S	G	S	A	A	R	F	-	-	-	-	G	E	I	L	T	D	L	T	I	G	G	I	I	D	-	-	-	-	-	-	-	-	-	-	-	-

Member	Chain	UniProtKB	GO term
d2rcfa1	A	O85043	GO:0015977
d2rcfa1	A	O85043	GO:0031469
d2rcfa1	A	O85043	GO:0031470

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M	K	I	M	Q	V	E	K	T	L	V	S	T	N	R	I	A	D	M	G	H	-	-	K	P	L	L	V	V	W	E	K	P	G	A	P	-	-	-	-	R	Q	V	A	V	D	A	I	G	C	I	P	G	D	W	V	L	C	V	G	S	S	A	A	R	E	A	A	G	S	K	S	Y	P	S	D	L	T	I	I	G	I	I	D	Q	W	N	G	-	-	-	-	-	-	-	-
M	Q	I	G	R	V	R	G	T	V	V	S	S	Q	K	E	P	S	M	V	G	V	K	F	L	L	L	Q	L	I	D	E	-	A	G	Q	P	L	P	Q	Y	E	V	A	A	D	G	V	G	A	G	L	D	E	W	V	L	F	S	R	G	S	A	A	R	Q	V	A	G	S	E	K	R	P	V	D	A	V	V	I	G	I	I	D	T	V	S	V	D	N	R	P	L	Y	S	K
M	L	R	A	T	V	T	G	N	V	W	S	T	R	R	I	E	G	I	P	A	-	-	G	A	F	L	E	V	E	V	E	G	T	G	S	-	-	-	-	R	M	I	A	F	D	V	L	G	S	G	V	G	E	H	V	L	I	A	Q	G	S	V	A	S	S	W	F	T	G	T	P	P	P	I	D	A	L	I	I	G	S	I	D	-	-	-	-	-	-	-	-	-	-	-	-
M	E	V	M	R	V	R	S	D	L	I	A	T	R	R	I	P	G	L	K	N	-	-	I	S	L	R	V	M	E	D	A	-	T	G	K	-	-	-	-	V	S	V	A	C	D	P	I	G	V	P	E	G	C	W	V	F	T	I	S	G	S	A	A	R	F	-	-	-	-	G	E	I	L	T	D	L	T	I	G	G	I	I	D	-	-	-	-	-	-	-	-	-	-	-	-

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M	K	I	M	Q	V	E	K	T	L	V	S	T	N	R	I	A	D	M	G	H	-	-	K	P	L	L	V	V	W	E	K	P	G	A	P	-	-	-	-	R	Q	V	A	V	D	A	I	G	C	I	P	G	D	W	V	L	C	V	G	S	S	A	A	R	E	A	A	G	S	K	S	Y	P	S	D	L	T	I	I	G	I	I	D	Q	W	N	G	-	-	-	-	-	-	-	-
M	Q	I	G	R	V	R	G	T	V	V	S	S	Q	K	E	P	S	M	V	G	V	K	F	L	L	L	Q	L	I	D	E	-	A	G	Q	P	L	P	Q	Y	E	V	A	A	D	G	V	G	A	G	L	D	E	W	V	L	F	S	R	G	S	A	A	R	Q	V	A	G	S	E	K	R	P	V	D	A	V	V	I	G	I	I	D	T	V	S	V	D	N	R	P	L	Y	S	K
M	L	R	A	T	V	T	G	N	V	W	S	T	R	R	I	E	G	I	P	A	-	-	G	A	F	L	E	V	E	V	E	G	T	G	S	-	-	-	-	R	M	I	A	F	D	V	L	G	S	G	V	G	E	H	V	L	I	A	Q	G	S	V	A	S	S	W	F	T	G	T	P	P	P	I	D	A	L	I	I	G	S	I	D	-	-	-	-	-	-	-	-	-	-	-	-
M	E	V	M	R	V	R	S	D	L	I	A	T	R	R	I	P	G	L	K	N	-	-	I	S	L	R	V	M	E	D	A	-	T	G	K	-	-	-	-	V	S	V	A	C	D	P	I	G	V	P	E	G	C	W	V	F	T	I	S	G	S	A	A	R	F	-	-	-	-	G	E	I	L	T	D	L	T	I	G	G	I	I	D	-	-	-	-	-	-	-	-	-	-	-	-

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M	K	I	M	Q	V	E	K	T	L	V	S	T	N	R	I	A	D	M	G	H	-	-	K	P	L	L	V	V	W	E	K	P	G	A	P	-	-	-	-	R	Q	V	A	V	D	A	I	G	C	I	P	G	D	W	V	L	C	V	G	S	S	A	A	R	E	A	A	G	S	K	S	Y	P	S	D	L	T	I	I	G	I	I	D	Q	W	N	G	-	-	-	-	-	-	-	-
M	Q	I	G	R	V	R	G	T	V	V	S	S	Q	K	E	P	S	M	V	G	V	K	F	L	L	L	Q	L	I	D	E	-	A	G	Q	P	L	P	Q	Y	E	V	A	A	D	G	V	G	A	G	L	D	E	W	V	L	F	S	R	G	S	A	A	R	Q	V	A	G	S	E	K	R	P	V	D	A	V	V	I	G	I	I	D	T	V	S	V	D	N	R	P	L	Y	S	K
M	L	R	A	T	V	T	G	N	V	W	S	T	R	R	I	E	G	I	P	A	-	-	G	A	F	L	E	V	E	V	E	G	T	G	S	-	-	-	-	R	M	I	A	F	D	V	L	G	S	G	V	G	E	H	V	L	I	A	Q	G	S	V	A	S	S	W	F	T	G	T	P	P	P	I	D	A	L	I	I	G	S	I	D	-	-	-	-	-	-	-	-	-	-	-	-
M	E	V	M	R	V	R	S	D	L	I	A	T	R	R	I	P	G	L	K	N	-	-	I	S	L	R	V	M	E	D	A	-	T	G	K	-	-	-	-	V	S	V	A	C	D	P	I	G	V	P	E	G	C	W	V	F	T	I	S	G	S	A	A	R	F	-	-	-	-	G	E	I	L	T	D	L	T	I	G	G	I	I	D	-	-	-	-	-	-	-	-	-	-	-	-