PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d2ed6a1  (  32 )    tvtktiethtdnietn---mdenLrIpVtAevgsGyFkMtdvsfdsdtLg
d2edma1  (  41 )                  svvanydqmMrVpIqRr-akvMsIrgersyntp-lg
                                        bbbbbbbbbb      bb   bbbbb   b

                             60        70        80        90        100 
d2ed6a1  (  79 )    kIkIrngksdaqMkeedAdLVITpvegralevtvgqnltFEGTFkVWNnt
d2edma1  (  75 )    kVaMknglsdkdMkdvsAdLVISTvtaprdpagtga-enSnMtLKILNnT
                    bbbb       aa      bbbbb              bbb  bbbbb  

                             110       120       130       140       150 
d2ed6a1  ( 129 )    srkInItgMqMvpkinpskafvgssntssftpvsIde--devgtFvCGTt
d2edma1  ( 125 )    gvdLlIndItVrptviagnikGntmsnTyfsskdIksssskiTlIdVcSk
                       bbbbbbbbb              bbbb   bb       bbb bbbb

                             160       170       180 
d2ed6a1  ( 177 )    FgapIaataggnlFdMyVhVtYsgt       
d2edma1  ( 175 )    Fedga-----afeAtMnIgFtsknvidikdei
                                bbbbbbbbb

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d2ed6a1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2ed6a1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Envelope protein VP28	WSSV envelope protein-like	White spot syndrome virus, WSSV [TaxId: 92652]		view
d2edma1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2edma1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Envelope protein VP26	WSSV envelope protein-like	White spot syndrome virus, WSSV [TaxId: 92652]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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T	V	T	K	T	I	E	T	H	T	D	N	I	E	T	N	-	-	-	M	D	E	N	L	R	I	P	V	T	A	E	V	G	S	G	Y	F	K	M	T	D	V	S	F	D	S	D	T	L	G	K	I	K	I	R	N	G	K	S	D	A	Q	M	K	E	E	D	A	D	L	V	I	T	P	V	E	G	R	A	L	E	V	T	V	G	Q	N	L	T	F	E	G	T	F	K	V	W	N	N	T	S	R	K	I	N	I	T	G	M	Q	M	V	P	K	I	N	P	S	K	A	F	V	G	S	S	N	T	S	S	F	T	P	V	S	I	D	E	-	-	D	E	V	G	T	F	V	C	G	T	T	F	G	A	P	I	A	A	T	A	G	G	N	L	F	D	M	Y	V	H	V	T	Y	S	G	T	-	-	-	-	-	-	-
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Member	Chain	UniProtKB	GO term

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T	V	T	K	T	I	E	T	H	T	D	N	I	E	T	N	-	-	-	M	D	E	N	L	R	I	P	V	T	A	E	V	G	S	G	Y	F	K	M	T	D	V	S	F	D	S	D	T	L	G	K	I	K	I	R	N	G	K	S	D	A	Q	M	K	E	E	D	A	D	L	V	I	T	P	V	E	G	R	A	L	E	V	T	V	G	Q	N	L	T	F	E	G	T	F	K	V	W	N	N	T	S	R	K	I	N	I	T	G	M	Q	M	V	P	K	I	N	P	S	K	A	F	V	G	S	S	N	T	S	S	F	T	P	V	S	I	D	E	-	-	D	E	V	G	T	F	V	C	G	T	T	F	G	A	P	I	A	A	T	A	G	G	N	L	F	D	M	Y	V	H	V	T	Y	S	G	T	-	-	-	-	-	-	-
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T	V	T	K	T	I	E	T	H	T	D	N	I	E	T	N	-	-	-	M	D	E	N	L	R	I	P	V	T	A	E	V	G	S	G	Y	F	K	M	T	D	V	S	F	D	S	D	T	L	G	K	I	K	I	R	N	G	K	S	D	A	Q	M	K	E	E	D	A	D	L	V	I	T	P	V	E	G	R	A	L	E	V	T	V	G	Q	N	L	T	F	E	G	T	F	K	V	W	N	N	T	S	R	K	I	N	I	T	G	M	Q	M	V	P	K	I	N	P	S	K	A	F	V	G	S	S	N	T	S	S	F	T	P	V	S	I	D	E	-	-	D	E	V	G	T	F	V	C	G	T	T	F	G	A	P	I	A	A	T	A	G	G	N	L	F	D	M	Y	V	H	V	T	Y	S	G	T	-	-	-	-	-	-	-
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T	V	T	K	T	I	E	T	H	T	D	N	I	E	T	N	-	-	-	M	D	E	N	L	R	I	P	V	T	A	E	V	G	S	G	Y	F	K	M	T	D	V	S	F	D	S	D	T	L	G	K	I	K	I	R	N	G	K	S	D	A	Q	M	K	E	E	D	A	D	L	V	I	T	P	V	E	G	R	A	L	E	V	T	V	G	Q	N	L	T	F	E	G	T	F	K	V	W	N	N	T	S	R	K	I	N	I	T	G	M	Q	M	V	P	K	I	N	P	S	K	A	F	V	G	S	S	N	T	S	S	F	T	P	V	S	I	D	E	-	-	D	E	V	G	T	F	V	C	G	T	T	F	G	A	P	I	A	A	T	A	G	G	N	L	F	D	M	Y	V	H	V	T	Y	S	G	T	-	-	-	-	-	-	-
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