PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d2o6pa1  (  30 )                               dsgtLnYeVykyntndtsiandy
d3qzma1  (  62 )                            sqatsqpInFqVqkdgsseksamddy
d3rtla1  ( 341 )                            kMtdlqdtkYvVyesvennesmmdtf
d4fc3e-  (   1 )    qqyppAdeSLqdaIknpaiidkehtadnwrpidFqMkndkgerqfyHyas
d4h8qa-  (   6 )                             kdgqydIaFkVLkdkteeismmnty
d4mypa-  ( 183 )                           tlsdgiytIpFvAkkanddsnssmqny
d4ympa-  (  10 )                                vfdAvIkAykdnsdeesyatvy
                                                bbbb bbbbb       33333

                             60        70        80        90        100 
d2o6pa1  (  53 )    FnkpAkyikkngkLyVqItVnhshwItgMsIe---g--hkeniisknta-
d3qzma1  (  88 )    MqhpgkVikqnnkYyFqTvLnnAsfWkeykFynannqeLattvvndnkk-
d3rtla1  ( 367 )    VkhpIktGmlngkkyMVMeTtnddywkdFmVe---g--qrvrtiskdak-
d4fc3e-  (  51 )    TvepAtVIftktgPiIeLGLktAstWkkFeVyegd-kklpV-LvSydsdk
d4h8qa-  (  31 )    VvspArltvkdgkkyIaMtLknsewItkFqTekn-ggfadAkvvsedka-
d4mypa-  ( 210 )    FnnpAwLkVkngkkmVaMtVndnktVtaLkTtla-gtlqdVkvvsedkd-
d4ympa-  (  32 )    ik-dpkLtiengkriItAtLkdSdffdyLkve-----fhdVkvlsedkrk
                        bbbbbb  bbbbbbbb  333bbbbbb       bb bbbbbb   

                             110       120       130       140       150 
d2o6pa1  (  97 )    kdeRtSeFeVskLngkIdgkIdvyidekvn-gkpfkydhhynITYkFnGp
d3qzma1  ( 137 )    adtrtInVaVepgyksLtTkVhivv----pqi---nynhrytthLeFeka
d3rtla1  ( 411 )    nntrtIIFpyvegktlYdAiVkvhv----kti---dydgqyhVrIvdke 
d4fc3e-  ( 100 )    -dyAyIrFpVsngtreVkIvSSIeyg--------nihedydyTlMvFaqp
d4h8qa-  (  79 )    antrvVefeAndlfaklnAkVkvdi----dsm--n-yhhfydVqIqFdpt
d4mypa-  ( 258 )    antriVeFeVedlnqplaAhVnyeapf---ng--svykgqadFrYvFd-t
d4ympa-  (  83 )    hGtkvIqfeVgelgkrynMqMhilip-------tlgydkefkiqFeVnmr
                      bbbbbbb       bbbbbbbbb           bbbbbbbbbbb   

                         
d2o6pa1  ( 146 )    tdvag
d3qzma1  ( 180 )    IptLa
d3rtla1                  
d4fc3e-  ( 142 )    Itn  
d4h8qa-  ( 122 )    ki   
d4mypa-  ( 302 )    Ak   
d4ympa-  ( 126 )    t--fv

Domains
Outliers

Domain ID	Name	Family	Source	STRING-DB
d2o6pa1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2o6pa1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Iron-regulated surface determinant protein C, IsdC	NEAT domain	Staphylococcus aureus [TaxId: 1280]	view
d3qzma1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d3qzma1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	NEAT domain	Staphylococcus aureus [TaxId: 158879]	view
d3rtla1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d3rtla1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Staphylococcus aureus [TaxId: 158879]	view
d4fc3e- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d4fc3e- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Staphylococcus aureus [TaxId: 196620]	view
d4h8qa- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d4h8qa- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Anthrax bacillus (Bacillus anthracis) [TaxId: 1392]	view
d4mypa- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d4mypa- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Listeria monocytogenes [TaxId: 1639]	view
d4ympa- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d4ympa- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Anthrax bacillus (Bacillus anthracis) [TaxId: 1392]	view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	S	Q	A	T	S	Q	P	I	N	F	Q	V	Q	K	D	G	S	S	E	K	S	A	M	D	D	Y	M	Q	H	P	G	K	V	I	K	Q	N	N	K	Y	Y	F	Q	T	V	L	N	N	A	S	F	W	K	E	Y	K	F	Y	N	A	N	N	Q	E	L	A	T	T	V	V	N	D	N	K	K	-	A	D	T	R	T	I	N	V	A	V	E	P	G	Y	K	S	L	T	T	K	V	H	I	V	V	-	-	-	-	P	Q	I	-	-	-	N	Y	N	H	R	Y	T	T	H	L	E	F	E	K	A	I	P	T	L	A
-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	K	M	T	D	L	Q	D	T	K	Y	V	V	Y	E	S	V	E	N	N	E	S	M	M	D	T	F	V	K	H	P	I	K	T	G	M	L	N	G	K	K	Y	M	V	M	E	T	T	N	D	D	Y	W	K	D	F	M	V	E	-	-	-	G	-	-	Q	R	V	R	T	I	S	K	D	A	K	-	N	N	T	R	T	I	I	F	P	Y	V	E	G	K	T	L	Y	D	A	I	V	K	V	H	V	-	-	-	-	K	T	I	-	-	-	D	Y	D	G	Q	Y	H	V	R	I	V	D	K	E	-	-	-	-	-	-
Q	Q	Y	P	P	A	D	E	S	L	Q	D	A	I	K	N	P	A	I	I	D	K	E	H	T	A	D	N	W	R	P	I	D	F	Q	M	K	N	D	K	G	E	R	Q	F	Y	H	Y	A	S	T	V	E	P	A	T	V	I	F	T	K	T	G	P	I	I	E	L	G	L	K	T	A	S	T	W	K	K	F	E	V	Y	E	G	D	-	K	K	L	P	V	-	L	V	S	Y	D	S	D	K	-	D	Y	A	Y	I	R	F	P	V	S	N	G	T	R	E	V	K	I	V	S	S	I	E	Y	G	-	-	-	-	-	-	-	-	N	I	H	E	D	Y	D	Y	T	L	M	V	F	A	Q	P	I	T	N	-	-
-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	K	D	G	Q	Y	D	I	A	F	K	V	L	K	D	K	T	E	E	I	S	M	M	N	T	Y	V	V	S	P	A	R	L	T	V	K	D	G	K	K	Y	I	A	M	T	L	K	N	S	E	W	I	T	K	F	Q	T	E	K	N	-	G	G	F	A	D	A	K	V	V	S	E	D	K	A	-	A	N	T	R	V	V	E	F	E	A	N	D	L	F	A	K	L	N	A	K	V	K	V	D	I	-	-	-	-	D	S	M	-	-	N	-	Y	H	H	F	Y	D	V	Q	I	Q	F	D	P	T	K	I	-	-	-
-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	T	L	S	D	G	I	Y	T	I	P	F	V	A	K	K	A	N	D	D	S	N	S	S	M	Q	N	Y	F	N	N	P	A	W	L	K	V	K	N	G	K	K	M	V	A	M	T	V	N	D	N	K	T	V	T	A	L	K	T	T	L	A	-	G	T	L	Q	D	V	K	V	V	S	E	D	K	D	-	A	N	T	R	I	V	E	F	E	V	E	D	L	N	Q	P	L	A	A	H	V	N	Y	E	A	P	F	-	-	-	N	G	-	-	S	V	Y	K	G	Q	A	D	F	R	Y	V	F	D	-	T	A	K	-	-	-
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Member	Chain	UniProtKB	GO term
d2o6pa1	A	Q8KQR1	GO:0009274
d2o6pa1	A	Q8KQR1	GO:0015886
d2o6pa1	A	Q8KQR1	GO:0030492

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-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	S	Q	A	T	S	Q	P	I	N	F	Q	V	Q	K	D	G	S	S	E	K	S	A	M	D	D	Y	M	Q	H	P	G	K	V	I	K	Q	N	N	K	Y	Y	F	Q	T	V	L	N	N	A	S	F	W	K	E	Y	K	F	Y	N	A	N	N	Q	E	L	A	T	T	V	V	N	D	N	K	K	-	A	D	T	R	T	I	N	V	A	V	E	P	G	Y	K	S	L	T	T	K	V	H	I	V	V	-	-	-	-	P	Q	I	-	-	-	N	Y	N	H	R	Y	T	T	H	L	E	F	E	K	A	I	P	T	L	A
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Q	Q	Y	P	P	A	D	E	S	L	Q	D	A	I	K	N	P	A	I	I	D	K	E	H	T	A	D	N	W	R	P	I	D	F	Q	M	K	N	D	K	G	E	R	Q	F	Y	H	Y	A	S	T	V	E	P	A	T	V	I	F	T	K	T	G	P	I	I	E	L	G	L	K	T	A	S	T	W	K	K	F	E	V	Y	E	G	D	-	K	K	L	P	V	-	L	V	S	Y	D	S	D	K	-	D	Y	A	Y	I	R	F	P	V	S	N	G	T	R	E	V	K	I	V	S	S	I	E	Y	G	-	-	-	-	-	-	-	-	N	I	H	E	D	Y	D	Y	T	L	M	V	F	A	Q	P	I	T	N	-	-
-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	K	D	G	Q	Y	D	I	A	F	K	V	L	K	D	K	T	E	E	I	S	M	M	N	T	Y	V	V	S	P	A	R	L	T	V	K	D	G	K	K	Y	I	A	M	T	L	K	N	S	E	W	I	T	K	F	Q	T	E	K	N	-	G	G	F	A	D	A	K	V	V	S	E	D	K	A	-	A	N	T	R	V	V	E	F	E	A	N	D	L	F	A	K	L	N	A	K	V	K	V	D	I	-	-	-	-	D	S	M	-	-	N	-	Y	H	H	F	Y	D	V	Q	I	Q	F	D	P	T	K	I	-	-	-
-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	T	L	S	D	G	I	Y	T	I	P	F	V	A	K	K	A	N	D	D	S	N	S	S	M	Q	N	Y	F	N	N	P	A	W	L	K	V	K	N	G	K	K	M	V	A	M	T	V	N	D	N	K	T	V	T	A	L	K	T	T	L	A	-	G	T	L	Q	D	V	K	V	V	S	E	D	K	D	-	A	N	T	R	I	V	E	F	E	V	E	D	L	N	Q	P	L	A	A	H	V	N	Y	E	A	P	F	-	-	-	N	G	-	-	S	V	Y	K	G	Q	A	D	F	R	Y	V	F	D	-	T	A	K	-	-	-
-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	V	F	D	A	V	I	K	A	Y	K	D	N	S	D	E	E	S	Y	A	T	V	Y	I	K	-	D	P	K	L	T	I	E	N	G	K	R	I	I	T	A	T	L	K	D	S	D	F	F	D	Y	L	K	V	E	-	-	-	-	-	F	H	D	V	K	V	L	S	E	D	K	R	K	H	G	T	K	V	I	Q	F	E	V	G	E	L	G	K	R	Y	N	M	Q	M	H	I	L	I	P	-	-	-	-	-	-	-	T	L	G	Y	D	K	E	F	K	I	Q	F	E	V	N	M	R	T	-	-	F	V

									10										20										30										40										50										60										70										80										90										100										110										120										130										140										150
-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	D	S	G	T	L	N	Y	E	V	Y	K	Y	N	T	N	D	T	S	I	A	N	D	Y	F	N	K	P	A	K	Y	I	K	K	N	G	K	L	Y	V	Q	I	T	V	N	H	S	H	W	I	T	G	M	S	I	E	-	-	-	G	-	-	H	K	E	N	I	I	S	K	N	T	A	-	K	D	E	R	T	S	E	F	E	V	S	K	L	N	G	K	I	D	G	K	I	D	V	Y	I	D	E	K	V	N	-	G	K	P	F	K	Y	D	H	H	Y	N	I	T	Y	K	F	N	G	P	T	D	V	A	G
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									10										20										30										40										50										60										70										80										90										100										110										120										130										140										150
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-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	T	L	S	D	G	I	Y	T	I	P	F	V	A	K	K	A	N	D	D	S	N	S	S	M	Q	N	Y	F	N	N	P	A	W	L	K	V	K	N	G	K	K	M	V	A	M	T	V	N	D	N	K	T	V	T	A	L	K	T	T	L	A	-	G	T	L	Q	D	V	K	V	V	S	E	D	K	D	-	A	N	T	R	I	V	E	F	E	V	E	D	L	N	Q	P	L	A	A	H	V	N	Y	E	A	P	F	-	-	-	N	G	-	-	S	V	Y	K	G	Q	A	D	F	R	Y	V	F	D	-	T	A	K	-	-	-
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