PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d2p6ra2  ( 489 )      dplTgfiFhdVLsrmeLsdiGALHLICrTpdMerLtvrktdswVeeeA
d2q0zx1  (  33 )                      tkvrgLIeiISnaaeYenIpirh---hednlL
d2xaua4  ( 521 )    pldpmlavmLigSfef-qcSqeiLTiVAMl--sVpnVfirpt--kdkkrA
                                        aaaaaaaaa                 aaaa

                             60        70        80        90        100 
d2p6ra2  ( 537 )    frlrkeLSyypsdfsveydwFlsEVKTAlCLkdwIeekd----edeIcak
d2q0zx1  (  62 )    rqlaqkVphklnnpkfn----dphvKTnLLLQahLsr--------qls--
d2xaua4  ( 566 )    ddakniFahp----------dgdhiTllnVyhaFksdeAyeygihkWCrd
                    aaa                   aaaaaaaaaaaa                

                             110       120       130       140       150 
d2p6ra2  ( 583 )    YgiapgdLrrIvetAewLSnaMnriAeev----gntsVsgLterIk-hGV
d2q0zx1  (  99 )    -----aeLqsDTeeIlskAirlIqacvdvlssngwlspalaAelaqVtqa
d2xaua4  ( 606 )    hyLnyrsLsaAdnirsqLerlMnry--------nlel             
                         aaaaaaaaaaaaaaaaaaa                          

                             160       170       180       190       200 
d2p6ra2  ( 628 )    keeLleLVrirhIgrvrArkLynagIrnaedIvrhrekVAslIg--rgiA
d2q0zx1  ( 147 )    wskdsyLkqLphFtsehikrCtdkgvesVfdIee-deernalLqLtdsqi
d2xaua4                                                               
                                                                      

                             210 
d2p6ra2  ( 676 )    erVvegisvks
d2q0zx1  ( 198 )    adVarfcnryp
d2xaua4

Domains
Outliers

Domain ID	Name	Family	Source	STRING-DB
d2p6ra2 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2p6ra2 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Hel308 helicase	Achaeal helicase C-terminal domain	Archaeoglobus fulgidus [TaxId: 2234]	view
d2q0zx1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2q0zx1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Protein pro2281	Sec63 N-terminal domain	Human (Homo sapiens) [TaxId: 9606]	view
d2xaua4 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2xaua4 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]	view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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