PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d2o70a1  (   2 )    dinvvnalayedFvklFgnVVEkcplISaaIwsy--rpFk-dladIearI
d2o8ia1  (   2 )           vtreeFvarFggvFehSpfIAerAydagGagleltAkaVhgaL
d2q37a1  (   6 )                gedewkvcC-GSseFakq-stsg----pltsqeaiyta
                                            aaaaa             aaaaaaaa

                             60        70        80        90        100 
d2o70a1  (  49 )    sefIh-slpdsgkegILrcHpdlAgrdLqsgtLtpesqeeQsqAgMttLd
d2o8ia1  (  45 )    CaqFr-vAseaerlgVLraHpdLagklaiag-----------elgldrLs
d2q37a1  (  39 )    rdiwfnqVnvtdwleAFsahpqigntp-----------seqstAf-atts
                    aaaaa    aaaaaaaaa                                

                             110       120       130       140       150 
d2o70a1  (  98 )    saeivhMyrlNseYkerFgFpFVICArlnnkadIvrqLseRlknrrtaEl
d2o8ia1  (  94 )    pqeharFtqlnsaYtekFgFpFIIAvkglnrhdIlsafdtridnnaaqEf
d2q37a1  (  90 )    asalqeLaewNvlYkkkFgfiFIicasgrtHa-elhaLkeryenrpivEl
                    aaaaaaaaaaaaaaaaaa                 aaaaaa    aaaaa

                             160       170 
d2o70a1  ( 148 )    ecAIeeVkkiCslRLhsiv  
d2o8ia1  ( 144 )    atAtgqVekIAwlrLaslpeg
d2q37a1  ( 140 )    eiAAeQ--kitelr-aklfsd
                    aaa      aaaa

Domains
Outliers

Domain ID	Name	Family	Source	STRING-DB
d2o70a1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2o70a1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	OHCU decarboxylase, UraD	UraD-like	Zebrafish (Danio rerio) [TaxId: 7955]	view
d2o8ia1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2o8ia1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Hypothetical protein Atu2327	UraD-like	Agrobacterium tumefaciens [TaxId: 358]	view
d2q37a1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2q37a1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	OHCU decarboxylase, UraD	UraD-like	Thale cress (Arabidopsis thaliana) [TaxId: 3702]	view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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Member	Chain	UniProtKB	GO term
d2o70a1	A	A1L259	GO:0000255
d2o70a1	A	A1L259	GO:0005777
d2o70a1	A	A1L259	GO:0006144
d2o70a1	A	A1L259	GO:0016831
d2o70a1	A	A1L259	GO:0019628
d2o70a1	A	A1L259	GO:0051997
d2o8ia1	A	A9CI02	GO:0000255
d2o8ia1	A	A9CI02	GO:0005777
d2o8ia1	A	A9CI02	GO:0006144
d2o8ia1	A	A9CI02	GO:0016831
d2o8ia1	A	A9CI02	GO:0019628
d2o8ia1	A	A9CI02	GO:0051997

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