PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d2jrxa1  (   1 )    mpqisrysdeqveqllaellnvlekhkaptdlslmvlgnmvtnlintsia
d2otaa1  (   7 )          ys--rve-iiqdlldvlvkeevtpdlal-clgnavtniia-qvp
                                   aaaaaaaaaa    aaaa   aaaaaaaaa     

                             60        70    
d2jrxa1  (  51 )    paqrqaiansfaralqssinedkah
d2otaa1  (  50 )    eskrvavvdnftkalv         
                       aaaaaaaaaaa

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d2jrxa1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2jrxa1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Uncharacterized protein YejL	YejL-like	Escherichia coli [TaxId: 562]		view
d2otaa1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2otaa1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Hypothetical protein CPS2611	YejL-like	Colwellia psychrerythraea [TaxId: 28229]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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M	P	Q	I	S	R	Y	S	D	E	Q	V	E	Q	L	L	A	E	L	L	N	V	L	E	K	H	K	A	P	T	D	L	S	L	M	V	L	G	N	M	V	T	N	L	I	N	T	S	I	A	P	A	Q	R	Q	A	I	A	N	S	F	A	R	A	L	Q	S	S	I	N	E	D	K	A	H
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Member	Chain	UniProtKB	GO term
d2jrxa1	A	P0AD24	GO:0005829
d2otaa1	A	Q481E4	GO:0003674
d2otaa1	A	Q481E4	GO:0005575
d2otaa1	A	Q481E4	GO:0008150

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M	P	Q	I	S	R	Y	S	D	E	Q	V	E	Q	L	L	A	E	L	L	N	V	L	E	K	H	K	A	P	T	D	L	S	L	M	V	L	G	N	M	V	T	N	L	I	N	T	S	I	A	P	A	Q	R	Q	A	I	A	N	S	F	A	R	A	L	Q	S	S	I	N	E	D	K	A	H
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									10										20										30										40										50										60										70
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