PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d2hh6a1  (   2 )    sfieigslndrewkaearAkaLpeYhhaYkaIqywtsggptdwqdtkrif
d2o4ta1  (  16 )                  hvsrvekLpdYqivYeIqkyLfkvGpvelnegigll
                                            aaaa  aa          aaaaaaaa

                             60        70        80        90        100 
d2hh6a1  (  59 )    ggIldlFeeGaaegkkvtdlTgedvaafcdel--dtt-wdkyrtlndsig
d2o4ta1  (  54 )    seIlgfFeegaaagkgvldvTgtdvaafCdaligdstyadlyqsiqqhv-
                    aaaaaaaaaaaa    aaaaa   aaaaaaa              aaa  

                     
d2hh6a1  ( 112 )    d
d2o4ta1  ( 105 )    d

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d2hh6a1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2hh6a1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Uncharacterized protein BH3980	BH3980-like	Bacillus halodurans [TaxId: 86665]		view
d2o4ta1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2o4ta1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Uncharacterized protein BH3976	BH3980-like	Bacillus halodurans [TaxId: 86665]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

									10										20										30										40										50										60										70										80										90										100
S	F	I	E	I	G	S	L	N	D	R	E	W	K	A	E	A	R	A	K	A	L	P	E	Y	H	H	A	Y	K	A	I	Q	Y	W	T	S	G	G	P	T	D	W	Q	D	T	K	R	I	F	G	G	I	L	D	L	F	E	E	G	A	A	E	G	K	K	V	T	D	L	T	G	E	D	V	A	A	F	C	D	E	L	-	-	D	T	T	-	W	D	K	Y	R	T	L	N	D	S	I	G	D
-	-	-	-	-	-	-	-	-	-	-	-	-	-	H	V	S	R	V	E	K	L	P	D	Y	Q	I	V	Y	E	I	Q	K	Y	L	F	K	V	G	P	V	E	L	N	E	G	I	G	L	L	S	E	I	L	G	F	F	E	E	G	A	A	A	G	K	G	V	L	D	V	T	G	T	D	V	A	A	F	C	D	A	L	I	G	D	S	T	Y	A	D	L	Y	Q	S	I	Q	Q	H	V	-	D

Member	Chain	UniProtKB	GO term

									10										20										30										40										50										60										70										80										90										100
S	F	I	E	I	G	S	L	N	D	R	E	W	K	A	E	A	R	A	K	A	L	P	E	Y	H	H	A	Y	K	A	I	Q	Y	W	T	S	G	G	P	T	D	W	Q	D	T	K	R	I	F	G	G	I	L	D	L	F	E	E	G	A	A	E	G	K	K	V	T	D	L	T	G	E	D	V	A	A	F	C	D	E	L	-	-	D	T	T	-	W	D	K	Y	R	T	L	N	D	S	I	G	D
-	-	-	-	-	-	-	-	-	-	-	-	-	-	H	V	S	R	V	E	K	L	P	D	Y	Q	I	V	Y	E	I	Q	K	Y	L	F	K	V	G	P	V	E	L	N	E	G	I	G	L	L	S	E	I	L	G	F	F	E	E	G	A	A	A	G	K	G	V	L	D	V	T	G	T	D	V	A	A	F	C	D	A	L	I	G	D	S	T	Y	A	D	L	Y	Q	S	I	Q	Q	H	V	-	D

									10										20										30										40										50										60										70										80										90										100
S	F	I	E	I	G	S	L	N	D	R	E	W	K	A	E	A	R	A	K	A	L	P	E	Y	H	H	A	Y	K	A	I	Q	Y	W	T	S	G	G	P	T	D	W	Q	D	T	K	R	I	F	G	G	I	L	D	L	F	E	E	G	A	A	E	G	K	K	V	T	D	L	T	G	E	D	V	A	A	F	C	D	E	L	-	-	D	T	T	-	W	D	K	Y	R	T	L	N	D	S	I	G	D
-	-	-	-	-	-	-	-	-	-	-	-	-	-	H	V	S	R	V	E	K	L	P	D	Y	Q	I	V	Y	E	I	Q	K	Y	L	F	K	V	G	P	V	E	L	N	E	G	I	G	L	L	S	E	I	L	G	F	F	E	E	G	A	A	A	G	K	G	V	L	D	V	T	G	T	D	V	A	A	F	C	D	A	L	I	G	D	S	T	Y	A	D	L	Y	Q	S	I	Q	Q	H	V	-	D

									10										20										30										40										50										60										70										80										90										100
S	F	I	E	I	G	S	L	N	D	R	E	W	K	A	E	A	R	A	K	A	L	P	E	Y	H	H	A	Y	K	A	I	Q	Y	W	T	S	G	G	P	T	D	W	Q	D	T	K	R	I	F	G	G	I	L	D	L	F	E	E	G	A	A	E	G	K	K	V	T	D	L	T	G	E	D	V	A	A	F	C	D	E	L	-	-	D	T	T	-	W	D	K	Y	R	T	L	N	D	S	I	G	D
-	-	-	-	-	-	-	-	-	-	-	-	-	-	H	V	S	R	V	E	K	L	P	D	Y	Q	I	V	Y	E	I	Q	K	Y	L	F	K	V	G	P	V	E	L	N	E	G	I	G	L	L	S	E	I	L	G	F	F	E	E	G	A	A	A	G	K	G	V	L	D	V	T	G	T	D	V	A	A	F	C	D	A	L	I	G	D	S	T	Y	A	D	L	Y	Q	S	I	Q	Q	H	V	-	D