PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d2p6va1  ( 582 )    ssaatetmenvCnfLstlIlAssgqstetaanV-elVqnLLdg-ieaedF
d2pp4a1  ( 119 )       garqlsklkrflttlqqyGndispeiGervrtlvlglvnstltieeF
                        aaaaaa   aaaaa          aaaa   aaaaaa     aaaa

                             60        70        80        90        100 
d2p6va1  ( 637 )    TsrLyrelnsspqpyLvpfL-rSLpalrqltp---------dSaafiqqs
d2pp4a1  ( 166 )    hsklqeatnfplrpfvipflkanlpllqrellhcArlakqnpaqylAqhE
                    aaaaaaa        aaaa    aaaaaa             aaaaaaa 

                             110 
d2p6va1  ( 678 )    q         
d2pp4a1  ( 216 )    qllldastts

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d2p6va1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2p6va1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Transcription initiation factor TFIID subunit 4, TAF4	TAFH domain-like	Human (Homo sapiens) [TaxId: 9606]		view
d2pp4a1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2pp4a1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	ETO	TAFH domain-like	Human (Homo sapiens) [TaxId: 9606]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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S	S	A	A	T	E	T	M	E	N	V	C	N	F	L	S	T	L	I	L	A	S	S	G	Q	S	T	E	T	A	A	N	V	-	E	L	V	Q	N	L	L	D	G	-	I	E	A	E	D	F	T	S	R	L	Y	R	E	L	N	S	S	P	Q	P	Y	L	V	P	F	L	-	R	S	L	P	A	L	R	Q	L	T	P	-	-	-	-	-	-	-	-	-	D	S	A	A	F	I	Q	Q	S	Q	-	-	-	-	-	-	-	-	-
-	-	-	G	A	R	Q	L	S	K	L	K	R	F	L	T	T	L	Q	Q	Y	G	N	D	I	S	P	E	I	G	E	R	V	R	T	L	V	L	G	L	V	N	S	T	L	T	I	E	E	F	H	S	K	L	Q	E	A	T	N	F	P	L	R	P	F	V	I	P	F	L	K	A	N	L	P	L	L	Q	R	E	L	L	H	C	A	R	L	A	K	Q	N	P	A	Q	Y	L	A	Q	H	E	Q	L	L	L	D	A	S	T	T	S

Member	Chain	UniProtKB	GO term
d2p6va1	A	O00268	GO:0005669
d2p6va1	A	O00268	GO:0006351
d2p6va1	A	O00268	GO:0006352
d2pp4a1	A	Q06455	GO:0003714
d2pp4a1	A	Q06455	GO:0006351
d2pp4a1	A	Q06455	GO:0045892

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-	-	-	G	A	R	Q	L	S	K	L	K	R	F	L	T	T	L	Q	Q	Y	G	N	D	I	S	P	E	I	G	E	R	V	R	T	L	V	L	G	L	V	N	S	T	L	T	I	E	E	F	H	S	K	L	Q	E	A	T	N	F	P	L	R	P	F	V	I	P	F	L	K	A	N	L	P	L	L	Q	R	E	L	L	H	C	A	R	L	A	K	Q	N	P	A	Q	Y	L	A	Q	H	E	Q	L	L	L	D	A	S	T	T	S

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-	-	-	G	A	R	Q	L	S	K	L	K	R	F	L	T	T	L	Q	Q	Y	G	N	D	I	S	P	E	I	G	E	R	V	R	T	L	V	L	G	L	V	N	S	T	L	T	I	E	E	F	H	S	K	L	Q	E	A	T	N	F	P	L	R	P	F	V	I	P	F	L	K	A	N	L	P	L	L	Q	R	E	L	L	H	C	A	R	L	A	K	Q	N	P	A	Q	Y	L	A	Q	H	E	Q	L	L	L	D	A	S	T	T	S

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-	-	-	G	A	R	Q	L	S	K	L	K	R	F	L	T	T	L	Q	Q	Y	G	N	D	I	S	P	E	I	G	E	R	V	R	T	L	V	L	G	L	V	N	S	T	L	T	I	E	E	F	H	S	K	L	Q	E	A	T	N	F	P	L	R	P	F	V	I	P	F	L	K	A	N	L	P	L	L	Q	R	E	L	L	H	C	A	R	L	A	K	Q	N	P	A	Q	Y	L	A	Q	H	E	Q	L	L	L	D	A	S	T	T	S