PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d3ci0k1  ( 204 )    qqinIntld----------vtqs-viLealf-----araLLqqrpa----
d3ci0k2  (  94 )    açfnLNaLaqpttasrplaVqqLialIsrldVpayrAelIAESLwEFIde
                      bb                    aaaa          aaaa        

                             60        70        80        90        100 
d3ci0k1  ( 242 )    --------------------------kgWedvdqFLaqplladvdertkk
d3ci0k2  ( 144 )    drsvqtrlGrEdseYlarsvpfyAanqpLadiseMrvVqgM---dagLyq
                                                                 aaaaa

                             110 
d3ci0k1  ( 266 )    qLktvLsvd    
d3ci0k2  ( 191 )    kLkplVçAlpmtr
                    aa   bb

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d3ci0k1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d3ci0k1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Pseudopilin GspK	GspK insert domain-like	Escherichia coli [TaxId: 562]		view
d3ci0k2 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d3ci0k2 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Pseudopilin GspK	GspK insert domain-like	Escherichia coli [TaxId: 562]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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Q	Q	I	N	I	N	T	L	D	-	-	-	-	-	-	-	-	-	-	V	T	Q	S	-	V	I	L	E	A	L	F	-	-	-	-	-	A	R	A	L	L	Q	Q	R	P	A	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	K	G	W	E	D	V	D	Q	F	L	A	Q	P	L	L	A	D	V	D	E	R	T	K	K	Q	L	K	T	V	L	S	V	D	-	-	-	-
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Show entries

Search:

Member	Chain	UniProtKB	GO term
d3ci0k1	K	Q8VPC3	GO:0005886
d3ci0k1	K	Q8VPC3	GO:0009306
d3ci0k1	K	Q8VPC3	GO:0015031
d3ci0k1	K	Q8VPC3	GO:0016020
d3ci0k1	K	Q8VPC3	GO:0046872
d3ci0k1	K	A0A4C3GMC1	GO:0005886
d3ci0k1	K	A0A4C3GMC1	GO:0009306
d3ci0k1	K	A0A4C3GMC1	GO:0015031
d3ci0k1	K	A0A4C3GMC1	GO:0016020
d3ci0k1	K	A0A4C3GMC1	GO:0046872

Showing 1 to 10 of 180 entries

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