PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d2qsba1  (   2 )    vrvdqnlfneVylLdeLsqditVpknvrkvAqdskakLsqenesldlrCa
d2qzga1  (   4 )    alspadklknIssLeeIvedttVprnIraaAdnAknaLhneeqelivrSa
                       aaaaaaa    aaaa      aaaaaaaaaaaaa       aaaaaa

                             60        70        80    
d2qsba1  (  53 )    tVls-Lde-AndpnVpahGrtdLytIiskLeaLs 
d2qzga1  (  57 )    tAiqyLddisedpn-pihTrtqiwgivseLetIkn
                    aaa             aaaaaaaaaaaaaaa

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d2qsba1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2qsba1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Uncharacterized protein Ta0600	Ta0600-like	Thermoplasma acidophilum [TaxId: 2303]		view
d2qzga1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2qzga1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Uncharacterized protein MMP1188	Ta0600-like	Methanococcus maripaludis [TaxId: 39152]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

									10										20										30										40										50										60										70										80
V	R	V	D	Q	N	L	F	N	E	V	Y	L	L	D	E	L	S	Q	D	I	T	V	P	K	N	V	R	K	V	A	Q	D	S	K	A	K	L	S	Q	E	N	E	S	L	D	L	R	C	A	T	V	L	S	-	L	D	E	-	A	N	D	P	N	V	P	A	H	G	R	T	D	L	Y	T	I	I	S	K	L	E	A	L	S	-
A	L	S	P	A	D	K	L	K	N	I	S	S	L	E	E	I	V	E	D	T	T	V	P	R	N	I	R	A	A	A	D	N	A	K	N	A	L	H	N	E	E	Q	E	L	I	V	R	S	A	T	A	I	Q	Y	L	D	D	I	S	E	D	P	N	-	P	I	H	T	R	T	Q	I	W	G	I	V	S	E	L	E	T	I	K	N

Member	Chain	UniProtKB	GO term

									10										20										30										40										50										60										70										80
V	R	V	D	Q	N	L	F	N	E	V	Y	L	L	D	E	L	S	Q	D	I	T	V	P	K	N	V	R	K	V	A	Q	D	S	K	A	K	L	S	Q	E	N	E	S	L	D	L	R	C	A	T	V	L	S	-	L	D	E	-	A	N	D	P	N	V	P	A	H	G	R	T	D	L	Y	T	I	I	S	K	L	E	A	L	S	-
A	L	S	P	A	D	K	L	K	N	I	S	S	L	E	E	I	V	E	D	T	T	V	P	R	N	I	R	A	A	A	D	N	A	K	N	A	L	H	N	E	E	Q	E	L	I	V	R	S	A	T	A	I	Q	Y	L	D	D	I	S	E	D	P	N	-	P	I	H	T	R	T	Q	I	W	G	I	V	S	E	L	E	T	I	K	N

									10										20										30										40										50										60										70										80
V	R	V	D	Q	N	L	F	N	E	V	Y	L	L	D	E	L	S	Q	D	I	T	V	P	K	N	V	R	K	V	A	Q	D	S	K	A	K	L	S	Q	E	N	E	S	L	D	L	R	C	A	T	V	L	S	-	L	D	E	-	A	N	D	P	N	V	P	A	H	G	R	T	D	L	Y	T	I	I	S	K	L	E	A	L	S	-
A	L	S	P	A	D	K	L	K	N	I	S	S	L	E	E	I	V	E	D	T	T	V	P	R	N	I	R	A	A	A	D	N	A	K	N	A	L	H	N	E	E	Q	E	L	I	V	R	S	A	T	A	I	Q	Y	L	D	D	I	S	E	D	P	N	-	P	I	H	T	R	T	Q	I	W	G	I	V	S	E	L	E	T	I	K	N

									10										20										30										40										50										60										70										80
V	R	V	D	Q	N	L	F	N	E	V	Y	L	L	D	E	L	S	Q	D	I	T	V	P	K	N	V	R	K	V	A	Q	D	S	K	A	K	L	S	Q	E	N	E	S	L	D	L	R	C	A	T	V	L	S	-	L	D	E	-	A	N	D	P	N	V	P	A	H	G	R	T	D	L	Y	T	I	I	S	K	L	E	A	L	S	-
A	L	S	P	A	D	K	L	K	N	I	S	S	L	E	E	I	V	E	D	T	T	V	P	R	N	I	R	A	A	A	D	N	A	K	N	A	L	H	N	E	E	Q	E	L	I	V	R	S	A	T	A	I	Q	Y	L	D	D	I	S	E	D	P	N	-	P	I	H	T	R	T	Q	I	W	G	I	V	S	E	L	E	T	I	K	N