PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d2azea1  ( 199 )    aqecqnleverqrrlerikqkqsqlqelIlqqIAfknlvqrnr-----ha
d2azeb1  ( 201 )     grlegltqdlrqlqeseqqldhlmnicttqlrllsedtdsqrlayvtcq
d5tuvb-  ( 124 )     kevidl---yaeiellereldqqklwlqqsi-nvmddsinnrfsyvth-
                                      aaaaaaaaaaa         aaaaa       

                             60        70        80        90        100 
d2azea1  ( 244 )    eqqasrppppnsvi----hlpfiivntskkTvidcsisndkf----eylf
d2azeb1  ( 250 )    dlrsiadPaeqmvmvikappetqlqavdss--enfqislkSkqgpidvfl
d5tuvb-  ( 177 )    dicncf---gdtllaiqapsgtqlevpipemgkkyqinl-shsgpihvll
                     a                                             bb 

                             110       120       130       140       150 
d2azea1  ( 286 )    nfdntfeihddievLkrmgmACgLesgsCsaedlkmArslVpkalepyVt
d2azeb1  ( 298 )    Cpee                                              
d5tuvb-  ( 229 )    I--n                                              
                                                                      

                             160 
d2azea1  ( 336 )    eMaqgtvggvf
d2azeb1                        
d5tuvb-

Domains
Outliers

Domain ID	Name	Family	Source	STRING-DB
d2azea1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2azea1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Transcription factor DP-1	DP dimerization segment	Human (Homo sapiens) [TaxId: 9606]	view
d2azeb1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2azeb1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Transcription factor E2F1	E2F dimerization segment	Human (Homo sapiens) [TaxId: 9606]	view
d5tuvb- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d5tuvb- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Human (Homo sapiens) [TaxId: 9606]	view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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Member	Chain	UniProtKB	GO term
d2azea1	A	Q14186	GO:0005667
d2azea1	A	Q14186	GO:0051726
d2azea1	A	Q01094	GO:0005667
d2azea1	A	Q01094	GO:0051726
d2azea1	A	P06400	GO:0005667
d2azea1	A	P06400	GO:0051726
d2azea1	A	Q14186	GO:0005667
d2azea1	A	Q14186	GO:0051726
d2azea1	A	Q01094	GO:0005667
d2azea1	A	Q01094	GO:0051726
d2azea1	A	P06400	GO:0005667
d2azea1	A	P06400	GO:0051726
d2azeb1	B	Q14186	GO:0000978
d2azeb1	B	Q14186	GO:0006357
d2azeb1	B	Q14186	GO:0046983
d2azeb1	B	Q01094	GO:0000978
d2azeb1	B	Q01094	GO:0006357
d2azeb1	B	Q01094	GO:0046983
d2azeb1	B	P06400	GO:0000978
d2azeb1	B	P06400	GO:0006357
d2azeb1	B	P06400	GO:0046983
d2azeb1	B	Q14186	GO:0000978
d2azeb1	B	Q14186	GO:0006357
d2azeb1	B	Q14186	GO:0046983
d2azeb1	B	Q01094	GO:0000978
d2azeb1	B	Q01094	GO:0006357
d2azeb1	B	Q01094	GO:0046983
d2azeb1	B	P06400	GO:0000978
d2azeb1	B	P06400	GO:0006357
d2azeb1	B	P06400	GO:0046983

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-	G	R	L	E	G	L	T	Q	D	L	R	Q	L	Q	E	S	E	Q	Q	L	D	H	L	M	N	I	C	T	T	Q	L	R	L	L	S	E	D	T	D	S	Q	R	L	A	Y	V	T	C	Q	D	L	R	S	I	A	D	P	A	E	Q	M	V	M	V	I	K	A	P	P	E	T	Q	L	Q	A	V	D	S	S	-	-	E	N	F	Q	I	S	L	K	S	K	Q	G	P	I	D	V	F	L	C	P	E	E	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
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