PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d2hq2a2  (   1 )           mnhytrwleLeqnpgkardIAglmnirEAeLAfaRvthdAwrM
d2hqva1  (  11 )    aypsiaaqkndddqaralaalapaiaaa-----apaeIlaiLpqgaavsA
                            aaaa  aa                  aaaaa       bbbb

                             60        70        80        90        100 
d2hq2a2  (  46 )    hgd-ireILaaLesVgeTkCiCrneyAvHeQvgtFtnqhLn-gaGlIlnp
d2hqva1  (  68 )    padrFdaIWn-ergwgeIl-ivqtgdivlevpghlpeGteshgwFnIhgd
                        aaaaaa           bb    bb        bb     bbb   

                             110       120       130       140       150 
d2hq2a2  (  95 )    raLDLrLfLnqWasvFHIkentagerqSIQFFDhqGdALLkVyatd-nTd
d2hqva1  ( 118 )    spigghikkdncaaItFVdrg-hgrsCSVwFn-aaggafkifVrrdnell
                        bbb 333  bbbbbbb     bbbbb         bbb        

                             160       170       180       190       200 
d2hq2a2  ( 145 )    ---maaWseLlarFitdentplelkavadatvVeqeWraMtdvhqFftLL
d2hqva1  ( 172 )    agQlakFeelrdgf                                    
                       aaaaaaaaaa                                     

                             210       220       230       240       250 
d2hq2a2  ( 201 )    rhnltrqqAFnlVaddlAckVsnsALaqILesAqqdgneImVfVgnrGCv
d2hqva1                                                               
                                                                      

                             260       270       280       290       300 
d2hq2a2  ( 251 )    QIFTgvVevvpmkgwlNIfNptFtLhLleesIaeAWVTrKptsgyvTSLE
d2hqva1                                                               
                                                                      

                             310       320       330 
d2hq2a2  ( 303 )    LFAhdgtqIAqLyGqrtgeqEqaqWrqIasLip
d2hqva1

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d2hq2a2 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2hq2a2 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Heme oxygenase ChuS	HemS/ChuS-like	Escherichia coli O157:H7 [TaxId: 83334]		view
d2hqva1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2hqva1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Hypothetical protein AGR_C_4470p	ChuX-like	Agrobacterium tumefaciens [TaxId: 358]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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A	Y	P	S	I	A	A	Q	K	N	D	D	D	Q	A	R	A	L	A	A	L	A	P	A	I	A	A	A	-	-	-	-	-	A	P	A	E	I	L	A	I	L	P	Q	G	A	A	V	S	A	P	A	D	R	F	D	A	I	W	N	-	E	R	G	W	G	E	I	L	-	I	V	Q	T	G	D	I	V	L	E	V	P	G	H	L	P	E	G	T	E	S	H	G	W	F	N	I	H	G	D	S	P	I	G	G	H	I	K	K	D	N	C	A	A	I	T	F	V	D	R	G	-	H	G	R	S	C	S	V	W	F	N	-	A	A	G	G	A	F	K	I	F	V	R	R	D	N	E	L	L	A	G	Q	L	A	K	F	E	E	L	R	D	G	F	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

Member	Chain	UniProtKB	GO term

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A	Y	P	S	I	A	A	Q	K	N	D	D	D	Q	A	R	A	L	A	A	L	A	P	A	I	A	A	A	-	-	-	-	-	A	P	A	E	I	L	A	I	L	P	Q	G	A	A	V	S	A	P	A	D	R	F	D	A	I	W	N	-	E	R	G	W	G	E	I	L	-	I	V	Q	T	G	D	I	V	L	E	V	P	G	H	L	P	E	G	T	E	S	H	G	W	F	N	I	H	G	D	S	P	I	G	G	H	I	K	K	D	N	C	A	A	I	T	F	V	D	R	G	-	H	G	R	S	C	S	V	W	F	N	-	A	A	G	G	A	F	K	I	F	V	R	R	D	N	E	L	L	A	G	Q	L	A	K	F	E	E	L	R	D	G	F	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

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A	Y	P	S	I	A	A	Q	K	N	D	D	D	Q	A	R	A	L	A	A	L	A	P	A	I	A	A	A	-	-	-	-	-	A	P	A	E	I	L	A	I	L	P	Q	G	A	A	V	S	A	P	A	D	R	F	D	A	I	W	N	-	E	R	G	W	G	E	I	L	-	I	V	Q	T	G	D	I	V	L	E	V	P	G	H	L	P	E	G	T	E	S	H	G	W	F	N	I	H	G	D	S	P	I	G	G	H	I	K	K	D	N	C	A	A	I	T	F	V	D	R	G	-	H	G	R	S	C	S	V	W	F	N	-	A	A	G	G	A	F	K	I	F	V	R	R	D	N	E	L	L	A	G	Q	L	A	K	F	E	E	L	R	D	G	F	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

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