PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1zjca1  (   3 )    nykekLqqYAeLLVkvGMnVqpkqpVFIrSsvetleLThlIveeAyhcgA
d2ayia1  (   3 )    afkrnlekLAelAIrvGLnLekgqeViAtApieavdFVrlLaekAyregA
                      aaaaaaaaaaaaa          bbbbb    aaaaaaaaaaaaa   

                             60        70        80        90        100 
d1zjca1  (  53 )    sdVrvvysdptlkrlkFenesvehFanheiksydvearmdyvkrgAANLa
d2ayia1  (  53 )    slFtviygdqelarkrLalapeegLd--kapawlyegmAraFregAArLa
                      bbbbb  aaaaaaaaaa            aaaaaaaaaaaa   bbbb

                             110       120       130       140       150 
d1zjca1  ( 103 )    LiSedpdlMdgIdsqkLqafqqqnarafkgymesvqknqFPwVvAAFPsk
d2ayia1  ( 101 )    VsGsdpkAleglppekvgraqkanaraykpAleAItefvTNwTiVPfAhp
                    bb           aaaaaaaaaaaaaa aaaaaaaa        bb    

                             160       170       180       190       200 
d1zjca1  ( 153 )    aWAkrVypelsveeAyikFideVFdIVrIdgndpvenWrqhianlsvyAq
d2ayia1  ( 151 )    gWAraVfpglpeeeAvrrLweaIfqATp------iaaweahnralhekva
                      aaaa     aaaaaaaaaaaaaaa        aaaaaaaaaaaaaaaa

                             210       220       230       240       250 
d1zjca1  ( 203 )    kLqqknYhALhYvsegTdLtVGLAknHiWedAtsyvngkeqaFIanIPTE
d2ayia1  ( 201 )    yLnarrFhALhFkgpgTdLvVGLAegHlWqgGAtaTkg-grlCNpnLPte
                    aaaa    bbbbbb  bbbbbb                            

                             260       270       280       290       300 
d1zjca1  ( 253 )    EVfTAPdrnrVdgyVtNklPLsyngtIIdqFkLmFkdGeIidfsAekgea
d2ayia1  ( 250 )    eVfTAPhrerVegvVrAsrplalggtlVegIfArFerGfAveVrAekgee
                     bbb      bbbbbb    bbb  bbb   bbbbb  bbbbbb    aa

                             310       320       330       340       350 
d1zjca1  ( 303 )    vLkdLIntdeGSrrLGEVALVpddspIsnrntiFyntLFDENaaCHLAIG
d2ayia1  ( 300 )    vLrrlLdtdeGArrLGEVALVpadNpIaktglvFfdtLFdeNAASHIAFG
                    aaaaa     333 bbbbb                 aaaa     bbbbb

                             360       370       380       390       400 
d1zjca1  ( 353 )    SAyAfNIqgGtemtveekiasgLNdSnvhvdFMIGssdLtIyGifedgsk
d2ayia1  ( 350 )    qAyqeNLegg-----eafrkrGGNeSlvhvDWMIGseeMdVdGlyedgtr
                       333           aaaa       bbbbb      bbbbb     b

                             410 
d1zjca1  ( 403 )    elVFenGnwAstF
d2ayia1  ( 398 )    tpLMrrGrwvv  
                    bbbbb  bb

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d1zjca1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1zjca1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Aminopeptidase S, AMPS	Thermophilic metalloprotease (M29)	Staphylococcus aureus [TaxId: 1280]		view
d2ayia1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2ayia1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Aminopeptidase T	Thermophilic metalloprotease (M29)	Thermus thermophilus [TaxId: 274]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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Member	Chain	UniProtKB	GO term
d1zjca1	A	A0A0H3K3S3	GO:0004177
d1zjca1	A	A0A0H3K3S3	GO:0006508
d1zjca1	A	A0A0H3K3S3	GO:0008237
d1zjca1	A	A0A0H3K3S3	GO:0046872
d2ayia1	A	P42778	GO:0004177
d2ayia1	A	P42778	GO:0006508
d2ayia1	A	P42778	GO:0008237
d2ayia1	A	P42778	GO:0046872

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A	F	K	R	N	L	E	K	L	A	E	L	A	I	R	V	G	L	N	L	E	K	G	Q	E	V	I	A	T	A	P	I	E	A	V	D	F	V	R	L	L	A	E	K	A	Y	R	E	G	A	S	L	F	T	V	I	Y	G	D	Q	E	L	A	R	K	R	L	A	L	A	P	E	E	G	L	D	-	-	K	A	P	A	W	L	Y	E	G	M	A	R	A	F	R	E	G	A	A	R	L	A	V	S	G	S	D	P	K	A	L	E	G	L	P	P	E	K	V	G	R	A	Q	K	A	N	A	R	A	Y	K	P	A	L	E	A	I	T	E	F	V	T	N	W	T	I	V	P	F	A	H	P	G	W	A	R	A	V	F	P	G	L	P	E	E	E	A	V	R	R	L	W	E	A	I	F	Q	A	T	P	-	-	-	-	-	-	I	A	A	W	E	A	H	N	R	A	L	H	E	K	V	A	Y	L	N	A	R	R	F	H	A	L	H	F	K	G	P	G	T	D	L	V	V	G	L	A	E	G	H	L	W	Q	G	G	A	T	A	T	K	G	-	G	R	L	C	N	P	N	L	P	T	E	E	V	F	T	A	P	H	R	E	R	V	E	G	V	V	R	A	S	R	P	L	A	L	G	G	T	L	V	E	G	I	F	A	R	F	E	R	G	F	A	V	E	V	R	A	E	K	G	E	E	V	L	R	R	L	L	D	T	D	E	G	A	R	R	L	G	E	V	A	L	V	P	A	D	N	P	I	A	K	T	G	L	V	F	F	D	T	L	F	D	E	N	A	A	S	H	I	A	F	G	Q	A	Y	Q	E	N	L	E	G	G	-	-	-	-	-	E	A	F	R	K	R	G	G	N	E	S	L	V	H	V	D	W	M	I	G	S	E	E	M	D	V	D	G	L	Y	E	D	G	T	R	T	P	L	M	R	R	G	R	W	V	V	-	-

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A	F	K	R	N	L	E	K	L	A	E	L	A	I	R	V	G	L	N	L	E	K	G	Q	E	V	I	A	T	A	P	I	E	A	V	D	F	V	R	L	L	A	E	K	A	Y	R	E	G	A	S	L	F	T	V	I	Y	G	D	Q	E	L	A	R	K	R	L	A	L	A	P	E	E	G	L	D	-	-	K	A	P	A	W	L	Y	E	G	M	A	R	A	F	R	E	G	A	A	R	L	A	V	S	G	S	D	P	K	A	L	E	G	L	P	P	E	K	V	G	R	A	Q	K	A	N	A	R	A	Y	K	P	A	L	E	A	I	T	E	F	V	T	N	W	T	I	V	P	F	A	H	P	G	W	A	R	A	V	F	P	G	L	P	E	E	E	A	V	R	R	L	W	E	A	I	F	Q	A	T	P	-	-	-	-	-	-	I	A	A	W	E	A	H	N	R	A	L	H	E	K	V	A	Y	L	N	A	R	R	F	H	A	L	H	F	K	G	P	G	T	D	L	V	V	G	L	A	E	G	H	L	W	Q	G	G	A	T	A	T	K	G	-	G	R	L	C	N	P	N	L	P	T	E	E	V	F	T	A	P	H	R	E	R	V	E	G	V	V	R	A	S	R	P	L	A	L	G	G	T	L	V	E	G	I	F	A	R	F	E	R	G	F	A	V	E	V	R	A	E	K	G	E	E	V	L	R	R	L	L	D	T	D	E	G	A	R	R	L	G	E	V	A	L	V	P	A	D	N	P	I	A	K	T	G	L	V	F	F	D	T	L	F	D	E	N	A	A	S	H	I	A	F	G	Q	A	Y	Q	E	N	L	E	G	G	-	-	-	-	-	E	A	F	R	K	R	G	G	N	E	S	L	V	H	V	D	W	M	I	G	S	E	E	M	D	V	D	G	L	Y	E	D	G	T	R	T	P	L	M	R	R	G	R	W	V	V	-	-

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N	Y	K	E	K	L	Q	Q	Y	A	E	L	L	V	K	V	G	M	N	V	Q	P	K	Q	P	V	F	I	R	S	S	V	E	T	L	E	L	T	H	L	I	V	E	E	A	Y	H	C	G	A	S	D	V	R	V	V	Y	S	D	P	T	L	K	R	L	K	F	E	N	E	S	V	E	H	F	A	N	H	E	I	K	S	Y	D	V	E	A	R	M	D	Y	V	K	R	G	A	A	N	L	A	L	I	S	E	D	P	D	L	M	D	G	I	D	S	Q	K	L	Q	A	F	Q	Q	Q	N	A	R	A	F	K	G	Y	M	E	S	V	Q	K	N	Q	F	P	W	V	V	A	A	F	P	S	K	A	W	A	K	R	V	Y	P	E	L	S	V	E	E	A	Y	I	K	F	I	D	E	V	F	D	I	V	R	I	D	G	N	D	P	V	E	N	W	R	Q	H	I	A	N	L	S	V	Y	A	Q	K	L	Q	Q	K	N	Y	H	A	L	H	Y	V	S	E	G	T	D	L	T	V	G	L	A	K	N	H	I	W	E	D	A	T	S	Y	V	N	G	K	E	Q	A	F	I	A	N	I	P	T	E	E	V	F	T	A	P	D	R	N	R	V	D	G	Y	V	T	N	K	L	P	L	S	Y	N	G	T	I	I	D	Q	F	K	L	M	F	K	D	G	E	I	I	D	F	S	A	E	K	G	E	A	V	L	K	D	L	I	N	T	D	E	G	S	R	R	L	G	E	V	A	L	V	P	D	D	S	P	I	S	N	R	N	T	I	F	Y	N	T	L	F	D	E	N	A	A	C	H	L	A	I	G	S	A	Y	A	F	N	I	Q	G	G	T	E	M	T	V	E	E	K	I	A	S	G	L	N	D	S	N	V	H	V	D	F	M	I	G	S	S	D	L	T	I	Y	G	I	F	E	D	G	S	K	E	L	V	F	E	N	G	N	W	A	S	T	F
A	F	K	R	N	L	E	K	L	A	E	L	A	I	R	V	G	L	N	L	E	K	G	Q	E	V	I	A	T	A	P	I	E	A	V	D	F	V	R	L	L	A	E	K	A	Y	R	E	G	A	S	L	F	T	V	I	Y	G	D	Q	E	L	A	R	K	R	L	A	L	A	P	E	E	G	L	D	-	-	K	A	P	A	W	L	Y	E	G	M	A	R	A	F	R	E	G	A	A	R	L	A	V	S	G	S	D	P	K	A	L	E	G	L	P	P	E	K	V	G	R	A	Q	K	A	N	A	R	A	Y	K	P	A	L	E	A	I	T	E	F	V	T	N	W	T	I	V	P	F	A	H	P	G	W	A	R	A	V	F	P	G	L	P	E	E	E	A	V	R	R	L	W	E	A	I	F	Q	A	T	P	-	-	-	-	-	-	I	A	A	W	E	A	H	N	R	A	L	H	E	K	V	A	Y	L	N	A	R	R	F	H	A	L	H	F	K	G	P	G	T	D	L	V	V	G	L	A	E	G	H	L	W	Q	G	G	A	T	A	T	K	G	-	G	R	L	C	N	P	N	L	P	T	E	E	V	F	T	A	P	H	R	E	R	V	E	G	V	V	R	A	S	R	P	L	A	L	G	G	T	L	V	E	G	I	F	A	R	F	E	R	G	F	A	V	E	V	R	A	E	K	G	E	E	V	L	R	R	L	L	D	T	D	E	G	A	R	R	L	G	E	V	A	L	V	P	A	D	N	P	I	A	K	T	G	L	V	F	F	D	T	L	F	D	E	N	A	A	S	H	I	A	F	G	Q	A	Y	Q	E	N	L	E	G	G	-	-	-	-	-	E	A	F	R	K	R	G	G	N	E	S	L	V	H	V	D	W	M	I	G	S	E	E	M	D	V	D	G	L	Y	E	D	G	T	R	T	P	L	M	R	R	G	R	W	V	V	-	-