PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d2gjva1  (   1 )    metlsVIhtVAnrLrelnpdmdIhisstdakvyiPtgqqvTVLIhycgSv
d3fz2a1  (   5 )     khteLraaVldaLekhdtgAtffdgrpa-----fdadfpAVAVyLtgae
                      aaaaaaaaaaaaaaa    bbb                bbbbbbbbbb

                             60        70        80        90        100 
d2gjva1  (  51 )    faepentdatvqkQlIrIsATVIVp---qisdAinaLdrLrrSLggieLp
d3fz2a1  (  51 )    ytg--------etwqAeLhIEvFLpaqVpaseLdaw-sriypvsdipals
                    b            bbbbbbbbbbb     aaaaaa               

                             110       120       130      
d2gjva1  (  98 )    -dCdrpLwlesekyigdaanfCRyALdMtASTlfiaeq
d3fz2a1  ( 100 )    dlit--svasgydyrrddagwSSADlTyvItYe     
                           bbbbbbbbb     bbbbbbbbbbb

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d2gjva1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2gjva1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Putative cytoplasmic protein STM4215	STM4215-like	Salmonella typhimurium [TaxId: 90371]		view
d3fz2a1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d3fz2a1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	Lambda phage gpU-like	Enterobacteria phage [TaxId: 10710]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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M	E	T	L	S	V	I	H	T	V	A	N	R	L	R	E	L	N	P	D	M	D	I	H	I	S	S	T	D	A	K	V	Y	I	P	T	G	Q	Q	V	T	V	L	I	H	Y	C	G	S	V	F	A	E	P	E	N	T	D	A	T	V	Q	K	Q	L	I	R	I	S	A	T	V	I	V	P	-	-	-	Q	I	S	D	A	I	N	A	L	D	R	L	R	R	S	L	G	G	I	E	L	P	-	D	C	D	R	P	L	W	L	E	S	E	K	Y	I	G	D	A	A	N	F	C	R	Y	A	L	D	M	T	A	S	T	L	F	I	A	E	Q
-	K	H	T	E	L	R	A	A	V	L	D	A	L	E	K	H	D	T	G	A	T	F	F	D	G	R	P	A	-	-	-	-	-	F	D	A	D	F	P	A	V	A	V	Y	L	T	G	A	E	Y	T	G	-	-	-	-	-	-	-	-	E	T	W	Q	A	E	L	H	I	E	V	F	L	P	A	Q	V	P	A	S	E	L	D	A	W	-	S	R	I	Y	P	V	S	D	I	P	A	L	S	D	L	I	T	-	-	S	V	A	S	G	Y	D	Y	R	R	D	D	A	G	W	S	S	A	D	L	T	Y	V	I	T	Y	E	-	-	-	-	-

Member	Chain	UniProtKB	GO term
d2gjva1	A	Q8ZKJ0	GO:0046872
d2gjva1	A	Q8ZKJ0	GO:0046872

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M	E	T	L	S	V	I	H	T	V	A	N	R	L	R	E	L	N	P	D	M	D	I	H	I	S	S	T	D	A	K	V	Y	I	P	T	G	Q	Q	V	T	V	L	I	H	Y	C	G	S	V	F	A	E	P	E	N	T	D	A	T	V	Q	K	Q	L	I	R	I	S	A	T	V	I	V	P	-	-	-	Q	I	S	D	A	I	N	A	L	D	R	L	R	R	S	L	G	G	I	E	L	P	-	D	C	D	R	P	L	W	L	E	S	E	K	Y	I	G	D	A	A	N	F	C	R	Y	A	L	D	M	T	A	S	T	L	F	I	A	E	Q
-	K	H	T	E	L	R	A	A	V	L	D	A	L	E	K	H	D	T	G	A	T	F	F	D	G	R	P	A	-	-	-	-	-	F	D	A	D	F	P	A	V	A	V	Y	L	T	G	A	E	Y	T	G	-	-	-	-	-	-	-	-	E	T	W	Q	A	E	L	H	I	E	V	F	L	P	A	Q	V	P	A	S	E	L	D	A	W	-	S	R	I	Y	P	V	S	D	I	P	A	L	S	D	L	I	T	-	-	S	V	A	S	G	Y	D	Y	R	R	D	D	A	G	W	S	S	A	D	L	T	Y	V	I	T	Y	E	-	-	-	-	-

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M	E	T	L	S	V	I	H	T	V	A	N	R	L	R	E	L	N	P	D	M	D	I	H	I	S	S	T	D	A	K	V	Y	I	P	T	G	Q	Q	V	T	V	L	I	H	Y	C	G	S	V	F	A	E	P	E	N	T	D	A	T	V	Q	K	Q	L	I	R	I	S	A	T	V	I	V	P	-	-	-	Q	I	S	D	A	I	N	A	L	D	R	L	R	R	S	L	G	G	I	E	L	P	-	D	C	D	R	P	L	W	L	E	S	E	K	Y	I	G	D	A	A	N	F	C	R	Y	A	L	D	M	T	A	S	T	L	F	I	A	E	Q
-	K	H	T	E	L	R	A	A	V	L	D	A	L	E	K	H	D	T	G	A	T	F	F	D	G	R	P	A	-	-	-	-	-	F	D	A	D	F	P	A	V	A	V	Y	L	T	G	A	E	Y	T	G	-	-	-	-	-	-	-	-	E	T	W	Q	A	E	L	H	I	E	V	F	L	P	A	Q	V	P	A	S	E	L	D	A	W	-	S	R	I	Y	P	V	S	D	I	P	A	L	S	D	L	I	T	-	-	S	V	A	S	G	Y	D	Y	R	R	D	D	A	G	W	S	S	A	D	L	T	Y	V	I	T	Y	E	-	-	-	-	-

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M	E	T	L	S	V	I	H	T	V	A	N	R	L	R	E	L	N	P	D	M	D	I	H	I	S	S	T	D	A	K	V	Y	I	P	T	G	Q	Q	V	T	V	L	I	H	Y	C	G	S	V	F	A	E	P	E	N	T	D	A	T	V	Q	K	Q	L	I	R	I	S	A	T	V	I	V	P	-	-	-	Q	I	S	D	A	I	N	A	L	D	R	L	R	R	S	L	G	G	I	E	L	P	-	D	C	D	R	P	L	W	L	E	S	E	K	Y	I	G	D	A	A	N	F	C	R	Y	A	L	D	M	T	A	S	T	L	F	I	A	E	Q
-	K	H	T	E	L	R	A	A	V	L	D	A	L	E	K	H	D	T	G	A	T	F	F	D	G	R	P	A	-	-	-	-	-	F	D	A	D	F	P	A	V	A	V	Y	L	T	G	A	E	Y	T	G	-	-	-	-	-	-	-	-	E	T	W	Q	A	E	L	H	I	E	V	F	L	P	A	Q	V	P	A	S	E	L	D	A	W	-	S	R	I	Y	P	V	S	D	I	P	A	L	S	D	L	I	T	-	-	S	V	A	S	G	Y	D	Y	R	R	D	D	A	G	W	S	S	A	D	L	T	Y	V	I	T	Y	E	-	-	-	-	-