PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1vrma1  (  44 )                        qyyelrdfalgtsvrIvVsSqkinprtIAe
d2o34a1  (   2 )    pqHvhtspvrdyrnrcarregetvfqvvveetdLrVTALa------elat
                                          bbbbbbb  bbbbbbb            

                             60        70        80        90        100 
d1vrma1  (  74 )    aIledkrItykFsftderSvVkkINdhpnewveVdeTysLIkaAcafAel
d2o34a1  (  47 )    paayVgelraqlk----vwefqpaFrhslvpvevpe--------------
                      aa  aaaaa                                       

                             110       120       130       140       150 
d1vrma1  ( 126 )    tdgaFDPTvGrLlelWGftgnynlrvPseeIealkhTgyknVlfddnrVV
d2o34a1  (  81 )    ----------------------------gApeVVrrAhGArl------Vg
                                                                      

                             160       170       180       190       200 
d1vrma1  ( 182 )    kngVkIdLggIakGyaLdrarqiAlsfdenAtGfVeAggDvrIIgpfgky
d2o34a1  (  98 )    -----vGPfaAvaGTIAQ-vAerfvdvSp--ELIVengGDLYLySe---r
                               aaaaaa   aaaa        bbbbb  bbbbb      

                             210       220       230       240       250 
d1vrma1  ( 233 )    pwvigvdPrgddvidyIyLk----sgAVAtSGdyeyfvvdgvryHhILdP
d2o34a1  ( 138 )    DRvvgILpdpasgdvGilVrAgtApVSLCGssa---righ----------
                     bbbbb        bbbbb       bbbb                    

                             260       270       280       290       300 
d1vrma1  ( 281 )    stGyPargVwSVTIIa-dAttADAlStAGFVAgk--dwrkvvldfpn---
d2o34a1  ( 176 )    --sLslgdgdLAVVRArdASLAdAAAtAFgnLrraddvaavterAaqlas
                              bbbbbb  aaaaaaaaaaaa       aaaaaaa      

                             310       320    
d1vrma1  ( 328 )    --gAhLLIVleggaiers-etFklfe
d2o34a1  ( 225 )    igIeGVYAQc-ggrigiwg--delav
                        bbbbbb    bbb

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d1vrma1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1vrma1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Hypothetical protein TM1553	ApbE-like	Thermotoga maritima [TaxId: 2336]		view
d2o34a1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2o34a1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Hypothetical protein DVU1097	DVU1097-like	Desulfovibrio vulgaris [TaxId: 881]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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Member	Chain	UniProtKB	GO term
d1vrma1	A	Q9X1N9	GO:0017013

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