PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d2blkb1  (   2 )    gkVfLtnafsinlke-fpttitidkldeedFçlkLelrledgtLinAIgh
d2j6ba1  (   1 )     mLyILnsailplkpgeeYtvkakeItiqeAkelVtke----qftSAIGh
                      bbbb               bbbbb aaaaaaaaaa      bbb    

                             60        70        80        90        100 
d2blkb1  (  52 )    dstInLVntLÇgtqlqknrvevk-negdeaLiIi-sqrleegkvl-sdke
d2j6ba1  (  46 )    qATaeLLssiLgvnVpmnrvqikVthgdrILAFmlkqrlpegvvVkttee
                    aaaaaaaaaaa                 bbbb               aaa

                             110     
d2blkb1  ( 101 )    IkdyrqgkisFyeVw  
d2j6ba1  (  96 )    Leki---gyeLwlfeIq
                    aa        bbbbb

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d2blkb1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2blkb1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Sulfolobus turreted icosahedral virus [TaxId: 269145]		view
d2j6ba1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2j6ba1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Afv3-109	STIV B116-like	Acidianus filamentous virus 1 [TaxId: 235266]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

									10										20										30										40										50										60										70										80										90										100										110
G	K	V	F	L	T	N	A	F	S	I	N	L	K	E	-	F	P	T	T	I	T	I	D	K	L	D	E	E	D	F	C	L	K	L	E	L	R	L	E	D	G	T	L	I	N	A	I	G	H	D	S	T	I	N	L	V	N	T	L	C	G	T	Q	L	Q	K	N	R	V	E	V	K	-	N	E	G	D	E	A	L	I	I	I	-	S	Q	R	L	E	E	G	K	V	L	-	S	D	K	E	I	K	D	Y	R	Q	G	K	I	S	F	Y	E	V	W	-	-
-	M	L	Y	I	L	N	S	A	I	L	P	L	K	P	G	E	E	Y	T	V	K	A	K	E	I	T	I	Q	E	A	K	E	L	V	T	K	E	-	-	-	-	Q	F	T	S	A	I	G	H	Q	A	T	A	E	L	L	S	S	I	L	G	V	N	V	P	M	N	R	V	Q	I	K	V	T	H	G	D	R	I	L	A	F	M	L	K	Q	R	L	P	E	G	V	V	V	K	T	T	E	E	L	E	K	I	-	-	-	G	Y	E	L	W	L	F	E	I	Q

Member	Chain	UniProtKB	GO term

									10										20										30										40										50										60										70										80										90										100										110
G	K	V	F	L	T	N	A	F	S	I	N	L	K	E	-	F	P	T	T	I	T	I	D	K	L	D	E	E	D	F	C	L	K	L	E	L	R	L	E	D	G	T	L	I	N	A	I	G	H	D	S	T	I	N	L	V	N	T	L	C	G	T	Q	L	Q	K	N	R	V	E	V	K	-	N	E	G	D	E	A	L	I	I	I	-	S	Q	R	L	E	E	G	K	V	L	-	S	D	K	E	I	K	D	Y	R	Q	G	K	I	S	F	Y	E	V	W	-	-
-	M	L	Y	I	L	N	S	A	I	L	P	L	K	P	G	E	E	Y	T	V	K	A	K	E	I	T	I	Q	E	A	K	E	L	V	T	K	E	-	-	-	-	Q	F	T	S	A	I	G	H	Q	A	T	A	E	L	L	S	S	I	L	G	V	N	V	P	M	N	R	V	Q	I	K	V	T	H	G	D	R	I	L	A	F	M	L	K	Q	R	L	P	E	G	V	V	V	K	T	T	E	E	L	E	K	I	-	-	-	G	Y	E	L	W	L	F	E	I	Q

									10										20										30										40										50										60										70										80										90										100										110
G	K	V	F	L	T	N	A	F	S	I	N	L	K	E	-	F	P	T	T	I	T	I	D	K	L	D	E	E	D	F	C	L	K	L	E	L	R	L	E	D	G	T	L	I	N	A	I	G	H	D	S	T	I	N	L	V	N	T	L	C	G	T	Q	L	Q	K	N	R	V	E	V	K	-	N	E	G	D	E	A	L	I	I	I	-	S	Q	R	L	E	E	G	K	V	L	-	S	D	K	E	I	K	D	Y	R	Q	G	K	I	S	F	Y	E	V	W	-	-
-	M	L	Y	I	L	N	S	A	I	L	P	L	K	P	G	E	E	Y	T	V	K	A	K	E	I	T	I	Q	E	A	K	E	L	V	T	K	E	-	-	-	-	Q	F	T	S	A	I	G	H	Q	A	T	A	E	L	L	S	S	I	L	G	V	N	V	P	M	N	R	V	Q	I	K	V	T	H	G	D	R	I	L	A	F	M	L	K	Q	R	L	P	E	G	V	V	V	K	T	T	E	E	L	E	K	I	-	-	-	G	Y	E	L	W	L	F	E	I	Q

									10										20										30										40										50										60										70										80										90										100										110
G	K	V	F	L	T	N	A	F	S	I	N	L	K	E	-	F	P	T	T	I	T	I	D	K	L	D	E	E	D	F	C	L	K	L	E	L	R	L	E	D	G	T	L	I	N	A	I	G	H	D	S	T	I	N	L	V	N	T	L	C	G	T	Q	L	Q	K	N	R	V	E	V	K	-	N	E	G	D	E	A	L	I	I	I	-	S	Q	R	L	E	E	G	K	V	L	-	S	D	K	E	I	K	D	Y	R	Q	G	K	I	S	F	Y	E	V	W	-	-
-	M	L	Y	I	L	N	S	A	I	L	P	L	K	P	G	E	E	Y	T	V	K	A	K	E	I	T	I	Q	E	A	K	E	L	V	T	K	E	-	-	-	-	Q	F	T	S	A	I	G	H	Q	A	T	A	E	L	L	S	S	I	L	G	V	N	V	P	M	N	R	V	Q	I	K	V	T	H	G	D	R	I	L	A	F	M	L	K	Q	R	L	P	E	G	V	V	V	K	T	T	E	E	L	E	K	I	-	-	-	G	Y	E	L	W	L	F	E	I	Q