PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d3jcla1  ( 324 )           anlpaçnieewLtarsVPSPLnWerktfqnÇnfnlssllryVq
d7eama-  ( 324 )    esivrfpnitnlÇpFgevfnatrFasVyaWnrkrIsnÇvAdYsvLynsas
                                  aaaaa           bbbbb  bb   aaa     

                             60        70        80        90        100 
d3jcla1  ( 367 )    aeslfÇnnidaskVygrçFgsisVDKFAVPrsrqvdLqlgnsgfLqtANY
d7eama-  ( 374 )    fstfkÇygvsptkLndlçftnVyADsFVIrGdevrqIapgqtgkIAdyNY
                      bbbbb          bb bbbbbbbb  333                 

                             110       120       130       140       150 
d3jcla1  ( 417 )    kIdtaatSÇQLhYtLpknnvtiNnhnpsSW-NRRygFnDaGvFgknqhdv
d7eama-  ( 424 )    kLpddFtGÇVIAwnS-nn----lDSkvgGnynylyRlfrk----------
                           bbbbbbb                   bbb              

                             160       170       180       190       200 
d3jcla1  ( 466 )    vyAqqÇftVrssyÇpÇAqPDivspÇttqTkPkSAfv-nVgdhçeglgvLe
d7eama-  ( 459 )    -----snLkpferdist------------eiyqagstpçngv-eg-----
                                                                      

                             210       220       230       240       250 
d3jcla1  ( 515 )    dnçgnAdPHkgçIçAnnSfIgWsHdtÇlVn----dRÇQIFANilLngins
d7eama-  ( 486 )    ---------------fnÇyfPLqsYgFqptngvgyqPyRVVVLsFellha
                                      b  bbb              bbbbbbbb    

                             260 
d3jcla1  ( 561 )    -gtTçStdlqlpn
d7eama-  ( 521 )    patVçGp      
                       bb

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d3jcla1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d3jcla1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Spike protein S1	SARS receptor-binding domain-like	Murine hepatitis virus (strain a59) [TaxID:11142]		view
d7eama- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d7eama- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Spike protein S1	SARS receptor-binding domain-like	Severe acute respiratory syndrome coronavirus 2 [TaxId: 2697049]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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-	-	-	-	-	-	-	A	N	L	P	A	C	N	I	E	E	W	L	T	A	R	S	V	P	S	P	L	N	W	E	R	K	T	F	Q	N	C	N	F	N	L	S	S	L	L	R	Y	V	Q	A	E	S	L	F	C	N	N	I	D	A	S	K	V	Y	G	R	C	F	G	S	I	S	V	D	K	F	A	V	P	R	S	R	Q	V	D	L	Q	L	G	N	S	G	F	L	Q	T	A	N	Y	K	I	D	T	A	A	T	S	C	Q	L	H	Y	T	L	P	K	N	N	V	T	I	N	N	H	N	P	S	S	W	-	N	R	R	Y	G	F	N	D	A	G	V	F	G	K	N	Q	H	D	V	V	Y	A	Q	Q	C	F	T	V	R	S	S	Y	C	P	C	A	Q	P	D	I	V	S	P	C	T	T	Q	T	K	P	K	S	A	F	V	-	N	V	G	D	H	C	E	G	L	G	V	L	E	D	N	C	G	N	A	D	P	H	K	G	C	I	C	A	N	N	S	F	I	G	W	S	H	D	T	C	L	V	N	-	-	-	-	D	R	C	Q	I	F	A	N	I	L	L	N	G	I	N	S	-	G	T	T	C	S	T	D	L	Q	L	P	N
E	S	I	V	R	F	P	N	I	T	N	L	C	P	F	G	E	V	F	N	A	T	R	F	A	S	V	Y	A	W	N	R	K	R	I	S	N	C	V	A	D	Y	S	V	L	Y	N	S	A	S	F	S	T	F	K	C	Y	G	V	S	P	T	K	L	N	D	L	C	F	T	N	V	Y	A	D	S	F	V	I	R	G	D	E	V	R	Q	I	A	P	G	Q	T	G	K	I	A	D	Y	N	Y	K	L	P	D	D	F	T	G	C	V	I	A	W	N	S	-	N	N	-	-	-	-	L	D	S	K	V	G	G	N	Y	N	Y	L	Y	R	L	F	R	K	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	S	N	L	K	P	F	E	R	D	I	S	T	-	-	-	-	-	-	-	-	-	-	-	-	E	I	Y	Q	A	G	S	T	P	C	N	G	V	-	E	G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	F	N	C	Y	F	P	L	Q	S	Y	G	F	Q	P	T	N	G	V	G	Y	Q	P	Y	R	V	V	V	L	S	F	E	L	L	H	A	P	A	T	V	C	G	P	-	-	-	-	-	-

Member	Chain	UniProtKB	GO term

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E	S	I	V	R	F	P	N	I	T	N	L	C	P	F	G	E	V	F	N	A	T	R	F	A	S	V	Y	A	W	N	R	K	R	I	S	N	C	V	A	D	Y	S	V	L	Y	N	S	A	S	F	S	T	F	K	C	Y	G	V	S	P	T	K	L	N	D	L	C	F	T	N	V	Y	A	D	S	F	V	I	R	G	D	E	V	R	Q	I	A	P	G	Q	T	G	K	I	A	D	Y	N	Y	K	L	P	D	D	F	T	G	C	V	I	A	W	N	S	-	N	N	-	-	-	-	L	D	S	K	V	G	G	N	Y	N	Y	L	Y	R	L	F	R	K	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	S	N	L	K	P	F	E	R	D	I	S	T	-	-	-	-	-	-	-	-	-	-	-	-	E	I	Y	Q	A	G	S	T	P	C	N	G	V	-	E	G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	F	N	C	Y	F	P	L	Q	S	Y	G	F	Q	P	T	N	G	V	G	Y	Q	P	Y	R	V	V	V	L	S	F	E	L	L	H	A	P	A	T	V	C	G	P	-	-	-	-	-	-

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-	-	-	-	-	-	-	A	N	L	P	A	C	N	I	E	E	W	L	T	A	R	S	V	P	S	P	L	N	W	E	R	K	T	F	Q	N	C	N	F	N	L	S	S	L	L	R	Y	V	Q	A	E	S	L	F	C	N	N	I	D	A	S	K	V	Y	G	R	C	F	G	S	I	S	V	D	K	F	A	V	P	R	S	R	Q	V	D	L	Q	L	G	N	S	G	F	L	Q	T	A	N	Y	K	I	D	T	A	A	T	S	C	Q	L	H	Y	T	L	P	K	N	N	V	T	I	N	N	H	N	P	S	S	W	-	N	R	R	Y	G	F	N	D	A	G	V	F	G	K	N	Q	H	D	V	V	Y	A	Q	Q	C	F	T	V	R	S	S	Y	C	P	C	A	Q	P	D	I	V	S	P	C	T	T	Q	T	K	P	K	S	A	F	V	-	N	V	G	D	H	C	E	G	L	G	V	L	E	D	N	C	G	N	A	D	P	H	K	G	C	I	C	A	N	N	S	F	I	G	W	S	H	D	T	C	L	V	N	-	-	-	-	D	R	C	Q	I	F	A	N	I	L	L	N	G	I	N	S	-	G	T	T	C	S	T	D	L	Q	L	P	N
E	S	I	V	R	F	P	N	I	T	N	L	C	P	F	G	E	V	F	N	A	T	R	F	A	S	V	Y	A	W	N	R	K	R	I	S	N	C	V	A	D	Y	S	V	L	Y	N	S	A	S	F	S	T	F	K	C	Y	G	V	S	P	T	K	L	N	D	L	C	F	T	N	V	Y	A	D	S	F	V	I	R	G	D	E	V	R	Q	I	A	P	G	Q	T	G	K	I	A	D	Y	N	Y	K	L	P	D	D	F	T	G	C	V	I	A	W	N	S	-	N	N	-	-	-	-	L	D	S	K	V	G	G	N	Y	N	Y	L	Y	R	L	F	R	K	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	S	N	L	K	P	F	E	R	D	I	S	T	-	-	-	-	-	-	-	-	-	-	-	-	E	I	Y	Q	A	G	S	T	P	C	N	G	V	-	E	G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	F	N	C	Y	F	P	L	Q	S	Y	G	F	Q	P	T	N	G	V	G	Y	Q	P	Y	R	V	V	V	L	S	F	E	L	L	H	A	P	A	T	V	C	G	P	-	-	-	-	-	-

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E	S	I	V	R	F	P	N	I	T	N	L	C	P	F	G	E	V	F	N	A	T	R	F	A	S	V	Y	A	W	N	R	K	R	I	S	N	C	V	A	D	Y	S	V	L	Y	N	S	A	S	F	S	T	F	K	C	Y	G	V	S	P	T	K	L	N	D	L	C	F	T	N	V	Y	A	D	S	F	V	I	R	G	D	E	V	R	Q	I	A	P	G	Q	T	G	K	I	A	D	Y	N	Y	K	L	P	D	D	F	T	G	C	V	I	A	W	N	S	-	N	N	-	-	-	-	L	D	S	K	V	G	G	N	Y	N	Y	L	Y	R	L	F	R	K	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	S	N	L	K	P	F	E	R	D	I	S	T	-	-	-	-	-	-	-	-	-	-	-	-	E	I	Y	Q	A	G	S	T	P	C	N	G	V	-	E	G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	F	N	C	Y	F	P	L	Q	S	Y	G	F	Q	P	T	N	G	V	G	Y	Q	P	Y	R	V	V	V	L	S	F	E	L	L	H	A	P	A	T	V	C	G	P	-	-	-	-	-	-