PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d2glza1  (   5 )    kt-pwelVidfhghtcpdIALGyrIAqlAqreg-irpapsecLVkAyT--
d2gvia1  (   4 )    lnfgIpwafefhghkcPy--pGyrAGsyAliaglekEkdhrTyLLSEspe
                           aaaaa          aaaaaaa             bbbb    

                             60        70        80        90        100 
d2glza1  (  53 )    -qscAldAIqvlnkAtigrhALiieethr-yYqFHftgtqdihqFtVspa
d2gvia1  (  57 )    dngcFndgAqaATgCtygkgLFsllgygklALILyrpg-rkAirVhvrns
                         aaaaaaa         bbb        bbb       bbbbb   

                             110       120       130       140       150 
d2glza1  ( 102 )    VldhLetLr----pls---------pqnkvleGvqyVltleesaFChydk
d2gvia1  ( 107 )    f-delstrAsdFfryrkqgyepseIpagaIdpVLewissledeeIFey-e
                       aaaa                    aaaaaaaaaaaa  aaaabb   

                             160 
d2glza1  ( 144 )    ipgqlsk    
d2gvia1  ( 157 )    idgftfpvkkn

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d2glza1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2glza1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	FwdE-like protein DSY1837 (Dhaf_2201)	FwdE-like	Desulfitobacterium hafniense [TaxId: 49338]		view
d2gvia1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2gvia1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Uncharacterized protein Ta1109	FwdE-like	Thermoplasma acidophilum [TaxId: 2303]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

									10										20										30										40										50										60										70										80										90										100										110										120										130										140										150										160
K	T	-	P	W	E	L	V	I	D	F	H	G	H	T	C	P	D	I	A	L	G	Y	R	I	A	Q	L	A	Q	R	E	G	-	I	R	P	A	P	S	E	C	L	V	K	A	Y	T	-	-	-	Q	S	C	A	L	D	A	I	Q	V	L	N	K	A	T	I	G	R	H	A	L	I	I	E	E	T	H	R	-	Y	Y	Q	F	H	F	T	G	T	Q	D	I	H	Q	F	T	V	S	P	A	V	L	D	H	L	E	T	L	R	-	-	-	-	P	L	S	-	-	-	-	-	-	-	-	-	P	Q	N	K	V	L	E	G	V	Q	Y	V	L	T	L	E	E	S	A	F	C	H	Y	D	K	I	P	G	Q	L	S	K	-	-	-	-
L	N	F	G	I	P	W	A	F	E	F	H	G	H	K	C	P	Y	-	-	P	G	Y	R	A	G	S	Y	A	L	I	A	G	L	E	K	E	K	D	H	R	T	Y	L	L	S	E	S	P	E	D	N	G	C	F	N	D	G	A	Q	A	A	T	G	C	T	Y	G	K	G	L	F	S	L	L	G	Y	G	K	L	A	L	I	L	Y	R	P	G	-	R	K	A	I	R	V	H	V	R	N	S	F	-	D	E	L	S	T	R	A	S	D	F	F	R	Y	R	K	Q	G	Y	E	P	S	E	I	P	A	G	A	I	D	P	V	L	E	W	I	S	S	L	E	D	E	E	I	F	E	Y	-	E	I	D	G	F	T	F	P	V	K	K	N

Member	Chain	UniProtKB	GO term
d2glza1	A	B8FYU2	GO:0046872
d2gvia1	A	Q9HJ63	GO:0005525
d2gvia1	A	Q9HJ63	GO:0046872

									10										20										30										40										50										60										70										80										90										100										110										120										130										140										150										160
K	T	-	P	W	E	L	V	I	D	F	H	G	H	T	C	P	D	I	A	L	G	Y	R	I	A	Q	L	A	Q	R	E	G	-	I	R	P	A	P	S	E	C	L	V	K	A	Y	T	-	-	-	Q	S	C	A	L	D	A	I	Q	V	L	N	K	A	T	I	G	R	H	A	L	I	I	E	E	T	H	R	-	Y	Y	Q	F	H	F	T	G	T	Q	D	I	H	Q	F	T	V	S	P	A	V	L	D	H	L	E	T	L	R	-	-	-	-	P	L	S	-	-	-	-	-	-	-	-	-	P	Q	N	K	V	L	E	G	V	Q	Y	V	L	T	L	E	E	S	A	F	C	H	Y	D	K	I	P	G	Q	L	S	K	-	-	-	-
L	N	F	G	I	P	W	A	F	E	F	H	G	H	K	C	P	Y	-	-	P	G	Y	R	A	G	S	Y	A	L	I	A	G	L	E	K	E	K	D	H	R	T	Y	L	L	S	E	S	P	E	D	N	G	C	F	N	D	G	A	Q	A	A	T	G	C	T	Y	G	K	G	L	F	S	L	L	G	Y	G	K	L	A	L	I	L	Y	R	P	G	-	R	K	A	I	R	V	H	V	R	N	S	F	-	D	E	L	S	T	R	A	S	D	F	F	R	Y	R	K	Q	G	Y	E	P	S	E	I	P	A	G	A	I	D	P	V	L	E	W	I	S	S	L	E	D	E	E	I	F	E	Y	-	E	I	D	G	F	T	F	P	V	K	K	N

									10										20										30										40										50										60										70										80										90										100										110										120										130										140										150										160
K	T	-	P	W	E	L	V	I	D	F	H	G	H	T	C	P	D	I	A	L	G	Y	R	I	A	Q	L	A	Q	R	E	G	-	I	R	P	A	P	S	E	C	L	V	K	A	Y	T	-	-	-	Q	S	C	A	L	D	A	I	Q	V	L	N	K	A	T	I	G	R	H	A	L	I	I	E	E	T	H	R	-	Y	Y	Q	F	H	F	T	G	T	Q	D	I	H	Q	F	T	V	S	P	A	V	L	D	H	L	E	T	L	R	-	-	-	-	P	L	S	-	-	-	-	-	-	-	-	-	P	Q	N	K	V	L	E	G	V	Q	Y	V	L	T	L	E	E	S	A	F	C	H	Y	D	K	I	P	G	Q	L	S	K	-	-	-	-
L	N	F	G	I	P	W	A	F	E	F	H	G	H	K	C	P	Y	-	-	P	G	Y	R	A	G	S	Y	A	L	I	A	G	L	E	K	E	K	D	H	R	T	Y	L	L	S	E	S	P	E	D	N	G	C	F	N	D	G	A	Q	A	A	T	G	C	T	Y	G	K	G	L	F	S	L	L	G	Y	G	K	L	A	L	I	L	Y	R	P	G	-	R	K	A	I	R	V	H	V	R	N	S	F	-	D	E	L	S	T	R	A	S	D	F	F	R	Y	R	K	Q	G	Y	E	P	S	E	I	P	A	G	A	I	D	P	V	L	E	W	I	S	S	L	E	D	E	E	I	F	E	Y	-	E	I	D	G	F	T	F	P	V	K	K	N

									10										20										30										40										50										60										70										80										90										100										110										120										130										140										150										160
K	T	-	P	W	E	L	V	I	D	F	H	G	H	T	C	P	D	I	A	L	G	Y	R	I	A	Q	L	A	Q	R	E	G	-	I	R	P	A	P	S	E	C	L	V	K	A	Y	T	-	-	-	Q	S	C	A	L	D	A	I	Q	V	L	N	K	A	T	I	G	R	H	A	L	I	I	E	E	T	H	R	-	Y	Y	Q	F	H	F	T	G	T	Q	D	I	H	Q	F	T	V	S	P	A	V	L	D	H	L	E	T	L	R	-	-	-	-	P	L	S	-	-	-	-	-	-	-	-	-	P	Q	N	K	V	L	E	G	V	Q	Y	V	L	T	L	E	E	S	A	F	C	H	Y	D	K	I	P	G	Q	L	S	K	-	-	-	-
L	N	F	G	I	P	W	A	F	E	F	H	G	H	K	C	P	Y	-	-	P	G	Y	R	A	G	S	Y	A	L	I	A	G	L	E	K	E	K	D	H	R	T	Y	L	L	S	E	S	P	E	D	N	G	C	F	N	D	G	A	Q	A	A	T	G	C	T	Y	G	K	G	L	F	S	L	L	G	Y	G	K	L	A	L	I	L	Y	R	P	G	-	R	K	A	I	R	V	H	V	R	N	S	F	-	D	E	L	S	T	R	A	S	D	F	F	R	Y	R	K	Q	G	Y	E	P	S	E	I	P	A	G	A	I	D	P	V	L	E	W	I	S	S	L	E	D	E	E	I	F	E	Y	-	E	I	D	G	F	T	F	P	V	K	K	N