PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1ygya4  ( 317 )    ggvvneeVapwldLVrkLGvlAgvl-sdelPvsLsVqVrgeLaae-eVev
d2iafa1  (   4 )         sShtvGPlaAnaFLqlLeqknlFdkTqrVkVeLYgsLAltgkghg
                                 aaaaaaaaaaa        bbbbbbb           

                             60        70        80        90        100 
d1ygya4  ( 365 )    LrlsALrGLfsaviedavtfvnApalaaer--------gVtAe----Ick
d2iafa1  (  50 )    TdkaIlngLEnkape----siprheIldsnlLnLAgkkeIpFheatDFlf
                    aaaaaaaa                aaaaa           b      bbb

                             110       120       130       140       150 
d1ygya4  ( 403 )    as--eSpnhrsVVdVrAvgadgsv-vtVSGTLygpqlsqkiVqingrhfd
d2iafa1  ( 103 )    lqkellpkhs-nGrFSAfdgnanllieqvYYSig-ggfitte------ed
                    b             bbbb     b bbb bbb      bbb         

                       
d1ygya4  ( 450 )    lr 
d2iafa1  ( 146 )    fdk

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d1ygya4 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1ygya4 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	D-3-phosphoglycerate dehydrogenase SerA	SerA intervening domain-like	Mycobacterium tuberculosis [TaxId: 1773]		view
d2iafa1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2iafa1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	L-serine dehydratase SdhL, N-terminal domain	Serine dehydratase beta chain-like	Legionella pneumophila [TaxId: 446]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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G	G	V	V	N	E	E	V	A	P	W	L	D	L	V	R	K	L	G	V	L	A	G	V	L	-	S	D	E	L	P	V	S	L	S	V	Q	V	R	G	E	L	A	A	E	-	E	V	E	V	L	R	L	S	A	L	R	G	L	F	S	A	V	I	E	D	A	V	T	F	V	N	A	P	A	L	A	A	E	R	-	-	-	-	-	-	-	-	G	V	T	A	E	-	-	-	-	I	C	K	A	S	-	-	E	S	P	N	H	R	S	V	V	D	V	R	A	V	G	A	D	G	S	V	-	V	T	V	S	G	T	L	Y	G	P	Q	L	S	Q	K	I	V	Q	I	N	G	R	H	F	D	L	R	-
-	-	-	-	-	S	S	H	T	V	G	P	L	A	A	N	A	F	L	Q	L	L	E	Q	K	N	L	F	D	K	T	Q	R	V	K	V	E	L	Y	G	S	L	A	L	T	G	K	G	H	G	T	D	K	A	I	L	N	G	L	E	N	K	A	P	E	-	-	-	-	S	I	P	R	H	E	I	L	D	S	N	L	L	N	L	A	G	K	K	E	I	P	F	H	E	A	T	D	F	L	F	L	Q	K	E	L	L	P	K	H	S	-	N	G	R	F	S	A	F	D	G	N	A	N	L	L	I	E	Q	V	Y	Y	S	I	G	-	G	G	F	I	T	T	E	-	-	-	-	-	-	E	D	F	D	K

Member	Chain	UniProtKB	GO term
d1ygya4	A	P9WNX3	GO:0004617
d1ygya4	A	P9WNX3	GO:0005515
d1ygya4	A	P9WNX3	GO:0005886
d1ygya4	A	P9WNX3	GO:0006564
d1ygya4	A	P9WNX3	GO:0009274
d1ygya4	A	P9WNX3	GO:0016491
d1ygya4	A	P9WNX3	GO:0016614
d1ygya4	A	P9WNX3	GO:0016616
d1ygya4	A	P9WNX3	GO:0051287
d1ygya4	A	P9WNX3	GO:0004617
d1ygya4	A	P9WNX3	GO:0005515
d1ygya4	A	P9WNX3	GO:0005886
d1ygya4	A	P9WNX3	GO:0006564
d1ygya4	A	P9WNX3	GO:0009274
d1ygya4	A	P9WNX3	GO:0016491
d1ygya4	A	P9WNX3	GO:0016614
d1ygya4	A	P9WNX3	GO:0016616
d1ygya4	A	P9WNX3	GO:0051287
d1ygya4	A	P9WNX3	GO:0004617
d1ygya4	A	P9WNX3	GO:0005515
d1ygya4	A	P9WNX3	GO:0005886
d1ygya4	A	P9WNX3	GO:0006564
d1ygya4	A	P9WNX3	GO:0009274
d1ygya4	A	P9WNX3	GO:0016491
d1ygya4	A	P9WNX3	GO:0016614
d1ygya4	A	P9WNX3	GO:0016616
d1ygya4	A	P9WNX3	GO:0051287
d1ygya4	A	P9WNX3	GO:0004617
d1ygya4	A	P9WNX3	GO:0005515
d1ygya4	A	P9WNX3	GO:0005886
d1ygya4	A	P9WNX3	GO:0006564
d1ygya4	A	P9WNX3	GO:0009274
d1ygya4	A	P9WNX3	GO:0016491
d1ygya4	A	P9WNX3	GO:0016614
d1ygya4	A	P9WNX3	GO:0016616
d1ygya4	A	P9WNX3	GO:0051287
d2iafa1	A	Q5WYB1	GO:0003941
d2iafa1	A	Q5WYB1	GO:0006094
d2iafa1	A	Q5WYB1	GO:0051539

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G	G	V	V	N	E	E	V	A	P	W	L	D	L	V	R	K	L	G	V	L	A	G	V	L	-	S	D	E	L	P	V	S	L	S	V	Q	V	R	G	E	L	A	A	E	-	E	V	E	V	L	R	L	S	A	L	R	G	L	F	S	A	V	I	E	D	A	V	T	F	V	N	A	P	A	L	A	A	E	R	-	-	-	-	-	-	-	-	G	V	T	A	E	-	-	-	-	I	C	K	A	S	-	-	E	S	P	N	H	R	S	V	V	D	V	R	A	V	G	A	D	G	S	V	-	V	T	V	S	G	T	L	Y	G	P	Q	L	S	Q	K	I	V	Q	I	N	G	R	H	F	D	L	R	-
-	-	-	-	-	S	S	H	T	V	G	P	L	A	A	N	A	F	L	Q	L	L	E	Q	K	N	L	F	D	K	T	Q	R	V	K	V	E	L	Y	G	S	L	A	L	T	G	K	G	H	G	T	D	K	A	I	L	N	G	L	E	N	K	A	P	E	-	-	-	-	S	I	P	R	H	E	I	L	D	S	N	L	L	N	L	A	G	K	K	E	I	P	F	H	E	A	T	D	F	L	F	L	Q	K	E	L	L	P	K	H	S	-	N	G	R	F	S	A	F	D	G	N	A	N	L	L	I	E	Q	V	Y	Y	S	I	G	-	G	G	F	I	T	T	E	-	-	-	-	-	-	E	D	F	D	K

									10										20										30										40										50										60										70										80										90										100										110										120										130										140										150
G	G	V	V	N	E	E	V	A	P	W	L	D	L	V	R	K	L	G	V	L	A	G	V	L	-	S	D	E	L	P	V	S	L	S	V	Q	V	R	G	E	L	A	A	E	-	E	V	E	V	L	R	L	S	A	L	R	G	L	F	S	A	V	I	E	D	A	V	T	F	V	N	A	P	A	L	A	A	E	R	-	-	-	-	-	-	-	-	G	V	T	A	E	-	-	-	-	I	C	K	A	S	-	-	E	S	P	N	H	R	S	V	V	D	V	R	A	V	G	A	D	G	S	V	-	V	T	V	S	G	T	L	Y	G	P	Q	L	S	Q	K	I	V	Q	I	N	G	R	H	F	D	L	R	-
-	-	-	-	-	S	S	H	T	V	G	P	L	A	A	N	A	F	L	Q	L	L	E	Q	K	N	L	F	D	K	T	Q	R	V	K	V	E	L	Y	G	S	L	A	L	T	G	K	G	H	G	T	D	K	A	I	L	N	G	L	E	N	K	A	P	E	-	-	-	-	S	I	P	R	H	E	I	L	D	S	N	L	L	N	L	A	G	K	K	E	I	P	F	H	E	A	T	D	F	L	F	L	Q	K	E	L	L	P	K	H	S	-	N	G	R	F	S	A	F	D	G	N	A	N	L	L	I	E	Q	V	Y	Y	S	I	G	-	G	G	F	I	T	T	E	-	-	-	-	-	-	E	D	F	D	K

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G	G	V	V	N	E	E	V	A	P	W	L	D	L	V	R	K	L	G	V	L	A	G	V	L	-	S	D	E	L	P	V	S	L	S	V	Q	V	R	G	E	L	A	A	E	-	E	V	E	V	L	R	L	S	A	L	R	G	L	F	S	A	V	I	E	D	A	V	T	F	V	N	A	P	A	L	A	A	E	R	-	-	-	-	-	-	-	-	G	V	T	A	E	-	-	-	-	I	C	K	A	S	-	-	E	S	P	N	H	R	S	V	V	D	V	R	A	V	G	A	D	G	S	V	-	V	T	V	S	G	T	L	Y	G	P	Q	L	S	Q	K	I	V	Q	I	N	G	R	H	F	D	L	R	-
-	-	-	-	-	S	S	H	T	V	G	P	L	A	A	N	A	F	L	Q	L	L	E	Q	K	N	L	F	D	K	T	Q	R	V	K	V	E	L	Y	G	S	L	A	L	T	G	K	G	H	G	T	D	K	A	I	L	N	G	L	E	N	K	A	P	E	-	-	-	-	S	I	P	R	H	E	I	L	D	S	N	L	L	N	L	A	G	K	K	E	I	P	F	H	E	A	T	D	F	L	F	L	Q	K	E	L	L	P	K	H	S	-	N	G	R	F	S	A	F	D	G	N	A	N	L	L	I	E	Q	V	Y	Y	S	I	G	-	G	G	F	I	T	T	E	-	-	-	-	-	-	E	D	F	D	K