PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1zdya-  (   3 )    eaadVerVyaaMeeAAglLgvaCardkIypLLstfqdtLveggSvVvFsM
d4ee6a-  (   5 )       altelysiIe-TAqvVdVtAshdkVwpILnAFqdvia--dSvISFrA
                         aaaaaaa            aaaaaaaaaa           bbbb 

                             60        70        80        90        100 
d1zdya-  (  53 )    asgrhsteLdFsISVptshgdPYatVvekglfpatghpVddLLadTqkhl
d4ee6a-  (  51 )    stgssaddLdCrFtmLpg-LdPyarAlehgltp-tdhpVGsLl-eVhenL
                      333    bbbbbb      aaaaaaa          aaaa   aaaa 

                             110       120       130       140       150 
d1zdya-  ( 103 )    pVsmFaIDGeVtggFkkTyAfFptdnMPgvaeLsaIpsMPpAVaenaelF
d4ee6a-  ( 101 )    pItsCGVdFGVagGFt-TwSfPsae-LGkVseLv-lpSiPdAVaanrdfF
                       bbbbbbb   bb   bbb        aaaa        aaaa aaaa

                             160       170       180       190       200 
d1zdya-  ( 153 )    arygLdkVqmTSMdYkkrqVnLyFs-----eLsaqTleaesVlaLVrelg
d4ee6a-  ( 151 )    ewgIadmVstVGIdYskrtMnLyFGggvgdrVpagVfeekgVraILgelg
                           bbbbbbb    bbbbbb              aaaaaaaaaa  

                             210       220       230       240       250 
d1zdya-  ( 198 )    LhvPnelGlkfCkrSfsVyPTLnwetgkIdrLCFaVISndptlVPSsdeg
d4ee6a-  ( 202 )    LaaPseeLlkFCerSfvIyVTLSwdspkInrFTYsVmTpePlgLpVd---
                         aaaaaaa    bbbbbbb       bbbbbbbb            

                             260       270       280       290       300 
d1zdya-  ( 248 )    diekFhnYAtkApyayvgekrTLvYgLTLspkeeyykLgAyYHItdvQrg
d4ee6a-  ( 249 )    LaptFerLiksApydt---grnYvYgIaStpkgeyh-IASyyqw      
                      aaaaaaaaa           bbbbbbb    bb   bbbbb       

                          
d1zdya-  ( 298 )    llkafd
d4ee6a-

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d1zdya- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1zdya- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Aromatic prenyltransferase	Prenyltransferase-like	Streptomyces sp. CL190 [TaxId: 93372]		view
d4ee6a- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d4ee6a- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Streptomyces cinnamonensis [TaxId: 1900]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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E	A	A	D	V	E	R	V	Y	A	A	M	E	E	A	A	G	L	L	G	V	A	C	A	R	D	K	I	Y	P	L	L	S	T	F	Q	D	T	L	V	E	G	G	S	V	V	V	F	S	M	A	S	G	R	H	S	T	E	L	D	F	S	I	S	V	P	T	S	H	G	D	P	Y	A	T	V	V	E	K	G	L	F	P	A	T	G	H	P	V	D	D	L	L	A	D	T	Q	K	H	L	P	V	S	M	F	A	I	D	G	E	V	T	G	G	F	K	K	T	Y	A	F	F	P	T	D	N	M	P	G	V	A	E	L	S	A	I	P	S	M	P	P	A	V	A	E	N	A	E	L	F	A	R	Y	G	L	D	K	V	Q	M	T	S	M	D	Y	K	K	R	Q	V	N	L	Y	F	S	-	-	-	-	-	E	L	S	A	Q	T	L	E	A	E	S	V	L	A	L	V	R	E	L	G	L	H	V	P	N	E	L	G	L	K	F	C	K	R	S	F	S	V	Y	P	T	L	N	W	E	T	G	K	I	D	R	L	C	F	A	V	I	S	N	D	P	T	L	V	P	S	S	D	E	G	D	I	E	K	F	H	N	Y	A	T	K	A	P	Y	A	Y	V	G	E	K	R	T	L	V	Y	G	L	T	L	S	P	K	E	E	Y	Y	K	L	G	A	Y	Y	H	I	T	D	V	Q	R	G	L	L	K	A	F	D
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Member	Chain	UniProtKB	GO term

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-	-	-	A	L	T	E	L	Y	S	I	I	E	-	T	A	Q	V	V	D	V	T	A	S	H	D	K	V	W	P	I	L	N	A	F	Q	D	V	I	A	-	-	D	S	V	I	S	F	R	A	S	T	G	S	S	A	D	D	L	D	C	R	F	T	M	L	P	G	-	L	D	P	Y	A	R	A	L	E	H	G	L	T	P	-	T	D	H	P	V	G	S	L	L	-	E	V	H	E	N	L	P	I	T	S	C	G	V	D	F	G	V	A	G	G	F	T	-	T	W	S	F	P	S	A	E	-	L	G	K	V	S	E	L	V	-	L	P	S	I	P	D	A	V	A	A	N	R	D	F	F	E	W	G	I	A	D	M	V	S	T	V	G	I	D	Y	S	K	R	T	M	N	L	Y	F	G	G	G	V	G	D	R	V	P	A	G	V	F	E	E	K	G	V	R	A	I	L	G	E	L	G	L	A	A	P	S	E	E	L	L	K	F	C	E	R	S	F	V	I	Y	V	T	L	S	W	D	S	P	K	I	N	R	F	T	Y	S	V	M	T	P	E	P	L	G	L	P	V	D	-	-	-	L	A	P	T	F	E	R	L	I	K	S	A	P	Y	D	T	-	-	-	G	R	N	Y	V	Y	G	I	A	S	T	P	K	G	E	Y	H	-	I	A	S	Y	Y	Q	W	-	-	-	-	-	-	-	-	-	-	-	-

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E	A	A	D	V	E	R	V	Y	A	A	M	E	E	A	A	G	L	L	G	V	A	C	A	R	D	K	I	Y	P	L	L	S	T	F	Q	D	T	L	V	E	G	G	S	V	V	V	F	S	M	A	S	G	R	H	S	T	E	L	D	F	S	I	S	V	P	T	S	H	G	D	P	Y	A	T	V	V	E	K	G	L	F	P	A	T	G	H	P	V	D	D	L	L	A	D	T	Q	K	H	L	P	V	S	M	F	A	I	D	G	E	V	T	G	G	F	K	K	T	Y	A	F	F	P	T	D	N	M	P	G	V	A	E	L	S	A	I	P	S	M	P	P	A	V	A	E	N	A	E	L	F	A	R	Y	G	L	D	K	V	Q	M	T	S	M	D	Y	K	K	R	Q	V	N	L	Y	F	S	-	-	-	-	-	E	L	S	A	Q	T	L	E	A	E	S	V	L	A	L	V	R	E	L	G	L	H	V	P	N	E	L	G	L	K	F	C	K	R	S	F	S	V	Y	P	T	L	N	W	E	T	G	K	I	D	R	L	C	F	A	V	I	S	N	D	P	T	L	V	P	S	S	D	E	G	D	I	E	K	F	H	N	Y	A	T	K	A	P	Y	A	Y	V	G	E	K	R	T	L	V	Y	G	L	T	L	S	P	K	E	E	Y	Y	K	L	G	A	Y	Y	H	I	T	D	V	Q	R	G	L	L	K	A	F	D
-	-	-	A	L	T	E	L	Y	S	I	I	E	-	T	A	Q	V	V	D	V	T	A	S	H	D	K	V	W	P	I	L	N	A	F	Q	D	V	I	A	-	-	D	S	V	I	S	F	R	A	S	T	G	S	S	A	D	D	L	D	C	R	F	T	M	L	P	G	-	L	D	P	Y	A	R	A	L	E	H	G	L	T	P	-	T	D	H	P	V	G	S	L	L	-	E	V	H	E	N	L	P	I	T	S	C	G	V	D	F	G	V	A	G	G	F	T	-	T	W	S	F	P	S	A	E	-	L	G	K	V	S	E	L	V	-	L	P	S	I	P	D	A	V	A	A	N	R	D	F	F	E	W	G	I	A	D	M	V	S	T	V	G	I	D	Y	S	K	R	T	M	N	L	Y	F	G	G	G	V	G	D	R	V	P	A	G	V	F	E	E	K	G	V	R	A	I	L	G	E	L	G	L	A	A	P	S	E	E	L	L	K	F	C	E	R	S	F	V	I	Y	V	T	L	S	W	D	S	P	K	I	N	R	F	T	Y	S	V	M	T	P	E	P	L	G	L	P	V	D	-	-	-	L	A	P	T	F	E	R	L	I	K	S	A	P	Y	D	T	-	-	-	G	R	N	Y	V	Y	G	I	A	S	T	P	K	G	E	Y	H	-	I	A	S	Y	Y	Q	W	-	-	-	-	-	-	-	-	-	-	-	-

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E	A	A	D	V	E	R	V	Y	A	A	M	E	E	A	A	G	L	L	G	V	A	C	A	R	D	K	I	Y	P	L	L	S	T	F	Q	D	T	L	V	E	G	G	S	V	V	V	F	S	M	A	S	G	R	H	S	T	E	L	D	F	S	I	S	V	P	T	S	H	G	D	P	Y	A	T	V	V	E	K	G	L	F	P	A	T	G	H	P	V	D	D	L	L	A	D	T	Q	K	H	L	P	V	S	M	F	A	I	D	G	E	V	T	G	G	F	K	K	T	Y	A	F	F	P	T	D	N	M	P	G	V	A	E	L	S	A	I	P	S	M	P	P	A	V	A	E	N	A	E	L	F	A	R	Y	G	L	D	K	V	Q	M	T	S	M	D	Y	K	K	R	Q	V	N	L	Y	F	S	-	-	-	-	-	E	L	S	A	Q	T	L	E	A	E	S	V	L	A	L	V	R	E	L	G	L	H	V	P	N	E	L	G	L	K	F	C	K	R	S	F	S	V	Y	P	T	L	N	W	E	T	G	K	I	D	R	L	C	F	A	V	I	S	N	D	P	T	L	V	P	S	S	D	E	G	D	I	E	K	F	H	N	Y	A	T	K	A	P	Y	A	Y	V	G	E	K	R	T	L	V	Y	G	L	T	L	S	P	K	E	E	Y	Y	K	L	G	A	Y	Y	H	I	T	D	V	Q	R	G	L	L	K	A	F	D
-	-	-	A	L	T	E	L	Y	S	I	I	E	-	T	A	Q	V	V	D	V	T	A	S	H	D	K	V	W	P	I	L	N	A	F	Q	D	V	I	A	-	-	D	S	V	I	S	F	R	A	S	T	G	S	S	A	D	D	L	D	C	R	F	T	M	L	P	G	-	L	D	P	Y	A	R	A	L	E	H	G	L	T	P	-	T	D	H	P	V	G	S	L	L	-	E	V	H	E	N	L	P	I	T	S	C	G	V	D	F	G	V	A	G	G	F	T	-	T	W	S	F	P	S	A	E	-	L	G	K	V	S	E	L	V	-	L	P	S	I	P	D	A	V	A	A	N	R	D	F	F	E	W	G	I	A	D	M	V	S	T	V	G	I	D	Y	S	K	R	T	M	N	L	Y	F	G	G	G	V	G	D	R	V	P	A	G	V	F	E	E	K	G	V	R	A	I	L	G	E	L	G	L	A	A	P	S	E	E	L	L	K	F	C	E	R	S	F	V	I	Y	V	T	L	S	W	D	S	P	K	I	N	R	F	T	Y	S	V	M	T	P	E	P	L	G	L	P	V	D	-	-	-	L	A	P	T	F	E	R	L	I	K	S	A	P	Y	D	T	-	-	-	G	R	N	Y	V	Y	G	I	A	S	T	P	K	G	E	Y	H	-	I	A	S	Y	Y	Q	W	-	-	-	-	-	-	-	-	-	-	-	-