PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d2ew0a1  (   5 )               ylthrCLIappeaddffanTVIYLarHdeeGAqGIIINr
d2gs5a1  (   2 )    fadrlfnaernepapGVLvaapsesedfarSVILIiehseyATfGVnLas
d2hafa1  (  16 )              mnLtnhfLVAmpsmdpyf-rSVIYICeHn-dGAmGLMIna
                                     bb            bbbbbbb    bbbbb   

                             60        70        80        90        100 
d2ew0a1  (  45 )    pagiqIkelLndldidAdnVn------pheVLqGGplrpeagfVLHtg--
d2gs5a1  (  55 )    rsdvaVfnvi-------p-eWvpcVtkpqAlYiGgplnqqsvvgVGvTaq
d2hafa1  (  57 )    piditVggmLkqvdiepaypqshqenlkkpVFnGGpvsedrgfILHrp--
                    bbbbb                        bbbb   bbbbbbbbbb    

                             110       120       130       140       150 
d2ew0a1  (  87 )    ---qptwhsSiaVgenVCiTtskdIldaIAhnegVgryQIAlGyAsWgkn
d2gs5a1  (  97 )    gvdAarvdnLtrLanrLVvnl-gAdpeeI--kplVsg-RLFaGhAeWapg
d2hafa1  ( 105 )    ---rdhYessmkmtddIAVTtskdIltvLGTeaEPegyiVAlGySgwsa-
                                     b                    bbbbbbbbb   

                             160       170       180       190     
d2ew0a1  ( 134 )    qLedeiargdwlicdAddLIFnlpyd-dRwdaAykkigvdrtwlas 
d2gs5a1  ( 145 )    qLaqeiengdwfvApAlpsDVtapgsvdvWGdVrrqpplplystfpv
d2hafa1  ( 151 )    gLeveltensWltAd-pelIFnTpvh-eKwqkAIqklg-----isp 
                      aaaaa    b                aaaa

Domains
Outliers

Domain ID	Name	Family	Source	STRING-DB
d2ew0a1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2ew0a1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Hypothetical protein ACIAD0353	VC0467-like	Acinetobacter sp. ADP1 [TaxId: 62977]	view
d2gs5a1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2gs5a1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Hypothetical protein DIP2367	VC0467-like	Corynebacterium diphtheriae [TaxId: 1717]	view
d2hafa1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2hafa1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Hypothetical protein VC0467	VC0467-like	Vibrio cholerae [TaxId: 666]	view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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Member	Chain	UniProtKB	GO term
d2ew0a1	A	Q6FF54	GO:0005829
d2gs5a1	A	Q6NEA9	GO:0005829
d2hafa1	A	Q9KUP8	GO:0003674
d2hafa1	A	Q9KUP8	GO:0005575
d2hafa1	A	Q9KUP8	GO:0005829
d2hafa1	A	Q9KUP8	GO:0008150

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