PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d2a1va1  (   4 )    qtpMqtvddLrsvCdeLphSletfpfddetLVFkVGylsksrmYAlTdit
d2fkia1  (   1 )        MtisellqyCmakpgAeqsvhndwkAtqikve----dvlFAMvKev
                          aaaaaaaa      bbb      bbbbb        bbbbb   

                             60        70        80        90        100 
d2a1va1  (  54 )    qdpLrLsLkvdpergeelrqahpqsIapGyhlnkkhWVtVtLdgtVpael
d2fkia1  (  43 )    enrpAvSlktSp-elaellrqqhsdvrpsrHlnkahwstvyldgSlpdsq
                        bbbb   a aaaaaaaa                bbbb      aaa

                             110       120       130 
d2a1va1  ( 104 )    LgeLLrgSYllVTkkgFtkaerkelgLpdsl
d2fkia1  (  92 )    iyylvdaSyqqAvnl-lpeekrkllvql   
                    aaaaaaaaaaaaaa    aaaaaaa

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d2a1va1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2a1va1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Hypothetical protein DR2400	YjbR-like	Deinococcus radiodurans [TaxId: 1299]		view
d2fkia1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2fkia1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Hypothetical protein YjbR	YjbR-like	Escherichia coli [TaxId: 562]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

									10										20										30										40										50										60										70										80										90										100										110										120										130
Q	T	P	M	Q	T	V	D	D	L	R	S	V	C	D	E	L	P	H	S	L	E	T	F	P	F	D	D	E	T	L	V	F	K	V	G	Y	L	S	K	S	R	M	Y	A	L	T	D	I	T	Q	D	P	L	R	L	S	L	K	V	D	P	E	R	G	E	E	L	R	Q	A	H	P	Q	S	I	A	P	G	Y	H	L	N	K	K	H	W	V	T	V	T	L	D	G	T	V	P	A	E	L	L	G	E	L	L	R	G	S	Y	L	L	V	T	K	K	G	F	T	K	A	E	R	K	E	L	G	L	P	D	S	L
-	-	-	-	M	T	I	S	E	L	L	Q	Y	C	M	A	K	P	G	A	E	Q	S	V	H	N	D	W	K	A	T	Q	I	K	V	E	-	-	-	-	D	V	L	F	A	M	V	K	E	V	E	N	R	P	A	V	S	L	K	T	S	P	-	E	L	A	E	L	L	R	Q	Q	H	S	D	V	R	P	S	R	H	L	N	K	A	H	W	S	T	V	Y	L	D	G	S	L	P	D	S	Q	I	Y	Y	L	V	D	A	S	Y	Q	Q	A	V	N	L	-	L	P	E	E	K	R	K	L	L	V	Q	L	-	-	-

Member	Chain	UniProtKB	GO term

									10										20										30										40										50										60										70										80										90										100										110										120										130
Q	T	P	M	Q	T	V	D	D	L	R	S	V	C	D	E	L	P	H	S	L	E	T	F	P	F	D	D	E	T	L	V	F	K	V	G	Y	L	S	K	S	R	M	Y	A	L	T	D	I	T	Q	D	P	L	R	L	S	L	K	V	D	P	E	R	G	E	E	L	R	Q	A	H	P	Q	S	I	A	P	G	Y	H	L	N	K	K	H	W	V	T	V	T	L	D	G	T	V	P	A	E	L	L	G	E	L	L	R	G	S	Y	L	L	V	T	K	K	G	F	T	K	A	E	R	K	E	L	G	L	P	D	S	L
-	-	-	-	M	T	I	S	E	L	L	Q	Y	C	M	A	K	P	G	A	E	Q	S	V	H	N	D	W	K	A	T	Q	I	K	V	E	-	-	-	-	D	V	L	F	A	M	V	K	E	V	E	N	R	P	A	V	S	L	K	T	S	P	-	E	L	A	E	L	L	R	Q	Q	H	S	D	V	R	P	S	R	H	L	N	K	A	H	W	S	T	V	Y	L	D	G	S	L	P	D	S	Q	I	Y	Y	L	V	D	A	S	Y	Q	Q	A	V	N	L	-	L	P	E	E	K	R	K	L	L	V	Q	L	-	-	-

									10										20										30										40										50										60										70										80										90										100										110										120										130
Q	T	P	M	Q	T	V	D	D	L	R	S	V	C	D	E	L	P	H	S	L	E	T	F	P	F	D	D	E	T	L	V	F	K	V	G	Y	L	S	K	S	R	M	Y	A	L	T	D	I	T	Q	D	P	L	R	L	S	L	K	V	D	P	E	R	G	E	E	L	R	Q	A	H	P	Q	S	I	A	P	G	Y	H	L	N	K	K	H	W	V	T	V	T	L	D	G	T	V	P	A	E	L	L	G	E	L	L	R	G	S	Y	L	L	V	T	K	K	G	F	T	K	A	E	R	K	E	L	G	L	P	D	S	L
-	-	-	-	M	T	I	S	E	L	L	Q	Y	C	M	A	K	P	G	A	E	Q	S	V	H	N	D	W	K	A	T	Q	I	K	V	E	-	-	-	-	D	V	L	F	A	M	V	K	E	V	E	N	R	P	A	V	S	L	K	T	S	P	-	E	L	A	E	L	L	R	Q	Q	H	S	D	V	R	P	S	R	H	L	N	K	A	H	W	S	T	V	Y	L	D	G	S	L	P	D	S	Q	I	Y	Y	L	V	D	A	S	Y	Q	Q	A	V	N	L	-	L	P	E	E	K	R	K	L	L	V	Q	L	-	-	-

									10										20										30										40										50										60										70										80										90										100										110										120										130
Q	T	P	M	Q	T	V	D	D	L	R	S	V	C	D	E	L	P	H	S	L	E	T	F	P	F	D	D	E	T	L	V	F	K	V	G	Y	L	S	K	S	R	M	Y	A	L	T	D	I	T	Q	D	P	L	R	L	S	L	K	V	D	P	E	R	G	E	E	L	R	Q	A	H	P	Q	S	I	A	P	G	Y	H	L	N	K	K	H	W	V	T	V	T	L	D	G	T	V	P	A	E	L	L	G	E	L	L	R	G	S	Y	L	L	V	T	K	K	G	F	T	K	A	E	R	K	E	L	G	L	P	D	S	L
-	-	-	-	M	T	I	S	E	L	L	Q	Y	C	M	A	K	P	G	A	E	Q	S	V	H	N	D	W	K	A	T	Q	I	K	V	E	-	-	-	-	D	V	L	F	A	M	V	K	E	V	E	N	R	P	A	V	S	L	K	T	S	P	-	E	L	A	E	L	L	R	Q	Q	H	S	D	V	R	P	S	R	H	L	N	K	A	H	W	S	T	V	Y	L	D	G	S	L	P	D	S	Q	I	Y	Y	L	V	D	A	S	Y	Q	Q	A	V	N	L	-	L	P	E	E	K	R	K	L	L	V	Q	L	-	-	-