PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d2c1wa1  (   6 )    gqlnheLsklFneLwdAdqnrMkSgkdYrIslqgkAgyvsAsfpLFqfVd
d6wlca2  ( 192 )                                     etyftqsRn---lqeFk
                                                                      

                             60        70        80        90        100 
d2c1wa1  (  65 )    eekLksrktFatFisLLdnyemdtgvaevvtpeeiaennnFLdaILetkV
d6wlca2  ( 206 )    prs----qmEidFlela----------------mdeFIery---------
                             aaaaaa                  aaaaaaa          

                             110       120       130       140       150 
d2c1wa1  ( 115 )    MkmAhdyLvrknqAkptrndFkvqLynIWFqlysrgsrpdSCGFEhVFvG
d6wlca2  ( 227 )    -kLe------------------------------------gyaFehIVyG
                                                               aaaa   

                             160       170       180       190       200 
d2c1wa1  ( 167 )    eskrgqemMgLhNWVQFylQEkrknIdYkGYvarqnksrpdeddqVLnLq
d6wlca2  ( 240 )    dfs-hsqLgGLHLlIGLAkrfkespFeledfipm--------dstVkNyf
                                 aaaaaaaaa   bbbb                 bbbb

                             210       220       230       240       250 
d2c1wa1  ( 217 )    FnWk--emvkpvgSsFIGVSPEFEFALYTIVFlasqekmsrevVrLeeYe
d6wlca2  ( 281 )    ItDaqtgSskcvCSVId-LlLddFveIIksqdls--vvskvvkvtIdyte
                    bbb         bbb     aaaaaaaa          bbbbbbbb  bb

                             260       270   
d2c1wa1  ( 265 )    LqIVVnRhgryIGtAyPvLlstnnp
d6wlca2  ( 328 )    IsFmLwCkdghVetFyPklq     
                    bbbbbbbb  bbbbbbb

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d2c1wa1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2c1wa1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	EndoU	Eukaryotic EndoU ribonuclease	African clawed frog (Xenopus laevis) [TaxId: 8355]		view
d6wlca2 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d6wlca2 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	Nsp15 C-terminal domain-like	Severe acute respiratory syndrome coronavirus 2 [TaxId: 2697049]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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Member	Chain	UniProtKB	GO term
d2c1wa1	A	Q8JFY9	GO:0003723
d2c1wa1	A	Q8JFY9	GO:0004519
d2c1wa1	A	Q8JFY9	GO:0004521
d2c1wa1	A	Q8JFY9	GO:0004540
d2c1wa1	A	Q8JFY9	GO:0005634
d2c1wa1	A	Q8JFY9	GO:0016829
d2c1wa1	A	Q8JFY9	GO:0030145
d2c1wa1	A	Q8JFY9	GO:0043144
d2c1wa1	A	Q8JFY9	GO:0046872

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