PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d4xfma-  (   9 )     gqvlvvADdftGAndAgvglaqhgArvsvvfdv--ntlhadll-gdAvv
d5dmha-  (   9 )    rPllGCiADDFtgAtDlAntlvrng-rtvqtiglpdvgavqdigeAdAlv
                       bbbbb  aaaaaaaaaaaaa    bbb                 bbb

                             60        70        80        90        100 
d4xfma-  (  55 )    intdSraarddvAsqrtaaAvaaWqavgGkGWiiKkidstlr----GnlG
d5dmha-  (  59 )    vAlkSrtipaveAvaqSlaAlqwlraqgCr-qFvFKYcStFdStdaGniG
                    bb       aaaaaaaaaaaaaaaaa     bbbbb            aa

                             110       120       130       140       150 
d4xfma-  ( 101 )    aEvaaAlsaAdvpvAliAAASPtlgrvtrqGevwvngrrltdtefAsdpk
d5dmha-  ( 108 )    pvaeallaaldsdFtiACPAFpengRtifrGhlfvgdallnesg-ehhpl
                    aaaaaaaaaa      bb   333 bbbb  bbbb  bb333        

                             160       170       180       190       200 
d4xfma-  ( 151 )    tpvtsAsiaaRlaeqtalpvaeihldevrq--anlahrlqqlAdegtrli
d5dmha-  ( 158 )    tp-tdAslvrvlqrqSknkvgllrydAvargahataeriaalrsdgvr-A
                           aaaaaa        bb aaaa      aaaaaaaaaa      

                             210       220       230       240       250 
d4xfma-  ( 199 )    ilDtdvqdDlthivnaAralpfrPllvGSaglSdAlAtaq-----dftrk
d5dmha-  ( 208 )    iADAvsdadlftlGeACan---lplitGGSGiAlGlPenfrragllpqrs
                    bb    aaaaaaaaaa        bbbb       aaaaa          

                             260       270       280       290       300 
d4xfma-  ( 244 )    te---kPllAvvGsmsdiAqkqiaAArlrsDvtlveidinalfspdsstv
d5dmha-  ( 259 )    vpaidgpGvvlAGsasratngqvarWle-qgrpAlridplalAr------
                           bbbbb    aaaaaaaaaaa      bbb              

                             310       320       330       340       350 
d4xfma-  ( 291 )    masqcedAlkaltn--ghHCiirtcq--------------qlgetishyl
d5dmha-  ( 302 )    geavadaAlafAaghgepvliyAtsspdevkavqaelgverAghlveqCl
                       aaaaaaaaaa      bbb                  aaaaaaaaaa

                             360       370       380       390       400 
d4xfma-  ( 344 )    GeltrsivqallPgGlYlSggdiaiavatalgAtgfqikgqiascvpwGy
d5dmha-  ( 352 )    atvAagllar-gtrRFvvAgGetSGavvqalgvrAlriGaqiapGvPAtv
                    aaaaaaaaa     bbbbb aaaaaaaaaa    bbbbbbbb   bbbbb

                             410       420       430  
d4xfma-  ( 406 )    llnSivgmtpvMtKaggfgnettlldvlrfiee 
d5dmha-  ( 401 )    tl-da-kplAlAlKsgnFGgpdFFdeAlrqlGgh
                    b        bbbbb        aaaaaaaaa

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d4xfma- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d4xfma- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Pectobacterium atrosepticum [TaxId: 218491]		view
d5dmha- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d5dmha- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Cupriavidus necator [TaxId: 381666]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

									10										20										30										40										50										60										70										80										90										100										110										120										130										140										150										160										170										180										190										200										210										220										230										240										250										260										270										280										290										300										310										320										330										340										350										360										370										380										390										400										410										420										430
-	G	Q	V	L	V	V	A	D	D	F	T	G	A	N	D	A	G	V	G	L	A	Q	H	G	A	R	V	S	V	V	F	D	V	-	-	N	T	L	H	A	D	L	L	-	G	D	A	V	V	I	N	T	D	S	R	A	A	R	D	D	V	A	S	Q	R	T	A	A	A	V	A	A	W	Q	A	V	G	G	K	G	W	I	I	K	K	I	D	S	T	L	R	-	-	-	-	G	N	L	G	A	E	V	A	A	A	L	S	A	A	D	V	P	V	A	L	I	A	A	A	S	P	T	L	G	R	V	T	R	Q	G	E	V	W	V	N	G	R	R	L	T	D	T	E	F	A	S	D	P	K	T	P	V	T	S	A	S	I	A	A	R	L	A	E	Q	T	A	L	P	V	A	E	I	H	L	D	E	V	R	Q	-	-	A	N	L	A	H	R	L	Q	Q	L	A	D	E	G	T	R	L	I	I	L	D	T	D	V	Q	D	D	L	T	H	I	V	N	A	A	R	A	L	P	F	R	P	L	L	V	G	S	A	G	L	S	D	A	L	A	T	A	Q	-	-	-	-	-	D	F	T	R	K	T	E	-	-	-	K	P	L	L	A	V	V	G	S	M	S	D	I	A	Q	K	Q	I	A	A	A	R	L	R	S	D	V	T	L	V	E	I	D	I	N	A	L	F	S	P	D	S	S	T	V	M	A	S	Q	C	E	D	A	L	K	A	L	T	N	-	-	G	H	H	C	I	I	R	T	C	Q	-	-	-	-	-	-	-	-	-	-	-	-	-	-	Q	L	G	E	T	I	S	H	Y	L	G	E	L	T	R	S	I	V	Q	A	L	L	P	G	G	L	Y	L	S	G	G	D	I	A	I	A	V	A	T	A	L	G	A	T	G	F	Q	I	K	G	Q	I	A	S	C	V	P	W	G	Y	L	L	N	S	I	V	G	M	T	P	V	M	T	K	A	G	G	F	G	N	E	T	T	L	L	D	V	L	R	F	I	E	E	-
R	P	L	L	G	C	I	A	D	D	F	T	G	A	T	D	L	A	N	T	L	V	R	N	G	-	R	T	V	Q	T	I	G	L	P	D	V	G	A	V	Q	D	I	G	E	A	D	A	L	V	V	A	L	K	S	R	T	I	P	A	V	E	A	V	A	Q	S	L	A	A	L	Q	W	L	R	A	Q	G	C	R	-	Q	F	V	F	K	Y	C	S	T	F	D	S	T	D	A	G	N	I	G	P	V	A	E	A	L	L	A	A	L	D	S	D	F	T	I	A	C	P	A	F	P	E	N	G	R	T	I	F	R	G	H	L	F	V	G	D	A	L	L	N	E	S	G	-	E	H	H	P	L	T	P	-	T	D	A	S	L	V	R	V	L	Q	R	Q	S	K	N	K	V	G	L	L	R	Y	D	A	V	A	R	G	A	H	A	T	A	E	R	I	A	A	L	R	S	D	G	V	R	-	A	I	A	D	A	V	S	D	A	D	L	F	T	L	G	E	A	C	A	N	-	-	-	L	P	L	I	T	G	G	S	G	I	A	L	G	L	P	E	N	F	R	R	A	G	L	L	P	Q	R	S	V	P	A	I	D	G	P	G	V	V	L	A	G	S	A	S	R	A	T	N	G	Q	V	A	R	W	L	E	-	Q	G	R	P	A	L	R	I	D	P	L	A	L	A	R	-	-	-	-	-	-	G	E	A	V	A	D	A	A	L	A	F	A	A	G	H	G	E	P	V	L	I	Y	A	T	S	S	P	D	E	V	K	A	V	Q	A	E	L	G	V	E	R	A	G	H	L	V	E	Q	C	L	A	T	V	A	A	G	L	L	A	R	-	G	T	R	R	F	V	V	A	G	G	E	T	S	G	A	V	V	Q	A	L	G	V	R	A	L	R	I	G	A	Q	I	A	P	G	V	P	A	T	V	T	L	-	D	A	-	K	P	L	A	L	A	L	K	S	G	N	F	G	G	P	D	F	F	D	E	A	L	R	Q	L	G	G	H

Member	Chain	UniProtKB	GO term

									10										20										30										40										50										60										70										80										90										100										110										120										130										140										150										160										170										180										190										200										210										220										230										240										250										260										270										280										290										300										310										320										330										340										350										360										370										380										390										400										410										420										430
-	G	Q	V	L	V	V	A	D	D	F	T	G	A	N	D	A	G	V	G	L	A	Q	H	G	A	R	V	S	V	V	F	D	V	-	-	N	T	L	H	A	D	L	L	-	G	D	A	V	V	I	N	T	D	S	R	A	A	R	D	D	V	A	S	Q	R	T	A	A	A	V	A	A	W	Q	A	V	G	G	K	G	W	I	I	K	K	I	D	S	T	L	R	-	-	-	-	G	N	L	G	A	E	V	A	A	A	L	S	A	A	D	V	P	V	A	L	I	A	A	A	S	P	T	L	G	R	V	T	R	Q	G	E	V	W	V	N	G	R	R	L	T	D	T	E	F	A	S	D	P	K	T	P	V	T	S	A	S	I	A	A	R	L	A	E	Q	T	A	L	P	V	A	E	I	H	L	D	E	V	R	Q	-	-	A	N	L	A	H	R	L	Q	Q	L	A	D	E	G	T	R	L	I	I	L	D	T	D	V	Q	D	D	L	T	H	I	V	N	A	A	R	A	L	P	F	R	P	L	L	V	G	S	A	G	L	S	D	A	L	A	T	A	Q	-	-	-	-	-	D	F	T	R	K	T	E	-	-	-	K	P	L	L	A	V	V	G	S	M	S	D	I	A	Q	K	Q	I	A	A	A	R	L	R	S	D	V	T	L	V	E	I	D	I	N	A	L	F	S	P	D	S	S	T	V	M	A	S	Q	C	E	D	A	L	K	A	L	T	N	-	-	G	H	H	C	I	I	R	T	C	Q	-	-	-	-	-	-	-	-	-	-	-	-	-	-	Q	L	G	E	T	I	S	H	Y	L	G	E	L	T	R	S	I	V	Q	A	L	L	P	G	G	L	Y	L	S	G	G	D	I	A	I	A	V	A	T	A	L	G	A	T	G	F	Q	I	K	G	Q	I	A	S	C	V	P	W	G	Y	L	L	N	S	I	V	G	M	T	P	V	M	T	K	A	G	G	F	G	N	E	T	T	L	L	D	V	L	R	F	I	E	E	-
R	P	L	L	G	C	I	A	D	D	F	T	G	A	T	D	L	A	N	T	L	V	R	N	G	-	R	T	V	Q	T	I	G	L	P	D	V	G	A	V	Q	D	I	G	E	A	D	A	L	V	V	A	L	K	S	R	T	I	P	A	V	E	A	V	A	Q	S	L	A	A	L	Q	W	L	R	A	Q	G	C	R	-	Q	F	V	F	K	Y	C	S	T	F	D	S	T	D	A	G	N	I	G	P	V	A	E	A	L	L	A	A	L	D	S	D	F	T	I	A	C	P	A	F	P	E	N	G	R	T	I	F	R	G	H	L	F	V	G	D	A	L	L	N	E	S	G	-	E	H	H	P	L	T	P	-	T	D	A	S	L	V	R	V	L	Q	R	Q	S	K	N	K	V	G	L	L	R	Y	D	A	V	A	R	G	A	H	A	T	A	E	R	I	A	A	L	R	S	D	G	V	R	-	A	I	A	D	A	V	S	D	A	D	L	F	T	L	G	E	A	C	A	N	-	-	-	L	P	L	I	T	G	G	S	G	I	A	L	G	L	P	E	N	F	R	R	A	G	L	L	P	Q	R	S	V	P	A	I	D	G	P	G	V	V	L	A	G	S	A	S	R	A	T	N	G	Q	V	A	R	W	L	E	-	Q	G	R	P	A	L	R	I	D	P	L	A	L	A	R	-	-	-	-	-	-	G	E	A	V	A	D	A	A	L	A	F	A	A	G	H	G	E	P	V	L	I	Y	A	T	S	S	P	D	E	V	K	A	V	Q	A	E	L	G	V	E	R	A	G	H	L	V	E	Q	C	L	A	T	V	A	A	G	L	L	A	R	-	G	T	R	R	F	V	V	A	G	G	E	T	S	G	A	V	V	Q	A	L	G	V	R	A	L	R	I	G	A	Q	I	A	P	G	V	P	A	T	V	T	L	-	D	A	-	K	P	L	A	L	A	L	K	S	G	N	F	G	G	P	D	F	F	D	E	A	L	R	Q	L	G	G	H

									10										20										30										40										50										60										70										80										90										100										110										120										130										140										150										160										170										180										190										200										210										220										230										240										250										260										270										280										290										300										310										320										330										340										350										360										370										380										390										400										410										420										430
-	G	Q	V	L	V	V	A	D	D	F	T	G	A	N	D	A	G	V	G	L	A	Q	H	G	A	R	V	S	V	V	F	D	V	-	-	N	T	L	H	A	D	L	L	-	G	D	A	V	V	I	N	T	D	S	R	A	A	R	D	D	V	A	S	Q	R	T	A	A	A	V	A	A	W	Q	A	V	G	G	K	G	W	I	I	K	K	I	D	S	T	L	R	-	-	-	-	G	N	L	G	A	E	V	A	A	A	L	S	A	A	D	V	P	V	A	L	I	A	A	A	S	P	T	L	G	R	V	T	R	Q	G	E	V	W	V	N	G	R	R	L	T	D	T	E	F	A	S	D	P	K	T	P	V	T	S	A	S	I	A	A	R	L	A	E	Q	T	A	L	P	V	A	E	I	H	L	D	E	V	R	Q	-	-	A	N	L	A	H	R	L	Q	Q	L	A	D	E	G	T	R	L	I	I	L	D	T	D	V	Q	D	D	L	T	H	I	V	N	A	A	R	A	L	P	F	R	P	L	L	V	G	S	A	G	L	S	D	A	L	A	T	A	Q	-	-	-	-	-	D	F	T	R	K	T	E	-	-	-	K	P	L	L	A	V	V	G	S	M	S	D	I	A	Q	K	Q	I	A	A	A	R	L	R	S	D	V	T	L	V	E	I	D	I	N	A	L	F	S	P	D	S	S	T	V	M	A	S	Q	C	E	D	A	L	K	A	L	T	N	-	-	G	H	H	C	I	I	R	T	C	Q	-	-	-	-	-	-	-	-	-	-	-	-	-	-	Q	L	G	E	T	I	S	H	Y	L	G	E	L	T	R	S	I	V	Q	A	L	L	P	G	G	L	Y	L	S	G	G	D	I	A	I	A	V	A	T	A	L	G	A	T	G	F	Q	I	K	G	Q	I	A	S	C	V	P	W	G	Y	L	L	N	S	I	V	G	M	T	P	V	M	T	K	A	G	G	F	G	N	E	T	T	L	L	D	V	L	R	F	I	E	E	-
R	P	L	L	G	C	I	A	D	D	F	T	G	A	T	D	L	A	N	T	L	V	R	N	G	-	R	T	V	Q	T	I	G	L	P	D	V	G	A	V	Q	D	I	G	E	A	D	A	L	V	V	A	L	K	S	R	T	I	P	A	V	E	A	V	A	Q	S	L	A	A	L	Q	W	L	R	A	Q	G	C	R	-	Q	F	V	F	K	Y	C	S	T	F	D	S	T	D	A	G	N	I	G	P	V	A	E	A	L	L	A	A	L	D	S	D	F	T	I	A	C	P	A	F	P	E	N	G	R	T	I	F	R	G	H	L	F	V	G	D	A	L	L	N	E	S	G	-	E	H	H	P	L	T	P	-	T	D	A	S	L	V	R	V	L	Q	R	Q	S	K	N	K	V	G	L	L	R	Y	D	A	V	A	R	G	A	H	A	T	A	E	R	I	A	A	L	R	S	D	G	V	R	-	A	I	A	D	A	V	S	D	A	D	L	F	T	L	G	E	A	C	A	N	-	-	-	L	P	L	I	T	G	G	S	G	I	A	L	G	L	P	E	N	F	R	R	A	G	L	L	P	Q	R	S	V	P	A	I	D	G	P	G	V	V	L	A	G	S	A	S	R	A	T	N	G	Q	V	A	R	W	L	E	-	Q	G	R	P	A	L	R	I	D	P	L	A	L	A	R	-	-	-	-	-	-	G	E	A	V	A	D	A	A	L	A	F	A	A	G	H	G	E	P	V	L	I	Y	A	T	S	S	P	D	E	V	K	A	V	Q	A	E	L	G	V	E	R	A	G	H	L	V	E	Q	C	L	A	T	V	A	A	G	L	L	A	R	-	G	T	R	R	F	V	V	A	G	G	E	T	S	G	A	V	V	Q	A	L	G	V	R	A	L	R	I	G	A	Q	I	A	P	G	V	P	A	T	V	T	L	-	D	A	-	K	P	L	A	L	A	L	K	S	G	N	F	G	G	P	D	F	F	D	E	A	L	R	Q	L	G	G	H

									10										20										30										40										50										60										70										80										90										100										110										120										130										140										150										160										170										180										190										200										210										220										230										240										250										260										270										280										290										300										310										320										330										340										350										360										370										380										390										400										410										420										430
-	G	Q	V	L	V	V	A	D	D	F	T	G	A	N	D	A	G	V	G	L	A	Q	H	G	A	R	V	S	V	V	F	D	V	-	-	N	T	L	H	A	D	L	L	-	G	D	A	V	V	I	N	T	D	S	R	A	A	R	D	D	V	A	S	Q	R	T	A	A	A	V	A	A	W	Q	A	V	G	G	K	G	W	I	I	K	K	I	D	S	T	L	R	-	-	-	-	G	N	L	G	A	E	V	A	A	A	L	S	A	A	D	V	P	V	A	L	I	A	A	A	S	P	T	L	G	R	V	T	R	Q	G	E	V	W	V	N	G	R	R	L	T	D	T	E	F	A	S	D	P	K	T	P	V	T	S	A	S	I	A	A	R	L	A	E	Q	T	A	L	P	V	A	E	I	H	L	D	E	V	R	Q	-	-	A	N	L	A	H	R	L	Q	Q	L	A	D	E	G	T	R	L	I	I	L	D	T	D	V	Q	D	D	L	T	H	I	V	N	A	A	R	A	L	P	F	R	P	L	L	V	G	S	A	G	L	S	D	A	L	A	T	A	Q	-	-	-	-	-	D	F	T	R	K	T	E	-	-	-	K	P	L	L	A	V	V	G	S	M	S	D	I	A	Q	K	Q	I	A	A	A	R	L	R	S	D	V	T	L	V	E	I	D	I	N	A	L	F	S	P	D	S	S	T	V	M	A	S	Q	C	E	D	A	L	K	A	L	T	N	-	-	G	H	H	C	I	I	R	T	C	Q	-	-	-	-	-	-	-	-	-	-	-	-	-	-	Q	L	G	E	T	I	S	H	Y	L	G	E	L	T	R	S	I	V	Q	A	L	L	P	G	G	L	Y	L	S	G	G	D	I	A	I	A	V	A	T	A	L	G	A	T	G	F	Q	I	K	G	Q	I	A	S	C	V	P	W	G	Y	L	L	N	S	I	V	G	M	T	P	V	M	T	K	A	G	G	F	G	N	E	T	T	L	L	D	V	L	R	F	I	E	E	-
R	P	L	L	G	C	I	A	D	D	F	T	G	A	T	D	L	A	N	T	L	V	R	N	G	-	R	T	V	Q	T	I	G	L	P	D	V	G	A	V	Q	D	I	G	E	A	D	A	L	V	V	A	L	K	S	R	T	I	P	A	V	E	A	V	A	Q	S	L	A	A	L	Q	W	L	R	A	Q	G	C	R	-	Q	F	V	F	K	Y	C	S	T	F	D	S	T	D	A	G	N	I	G	P	V	A	E	A	L	L	A	A	L	D	S	D	F	T	I	A	C	P	A	F	P	E	N	G	R	T	I	F	R	G	H	L	F	V	G	D	A	L	L	N	E	S	G	-	E	H	H	P	L	T	P	-	T	D	A	S	L	V	R	V	L	Q	R	Q	S	K	N	K	V	G	L	L	R	Y	D	A	V	A	R	G	A	H	A	T	A	E	R	I	A	A	L	R	S	D	G	V	R	-	A	I	A	D	A	V	S	D	A	D	L	F	T	L	G	E	A	C	A	N	-	-	-	L	P	L	I	T	G	G	S	G	I	A	L	G	L	P	E	N	F	R	R	A	G	L	L	P	Q	R	S	V	P	A	I	D	G	P	G	V	V	L	A	G	S	A	S	R	A	T	N	G	Q	V	A	R	W	L	E	-	Q	G	R	P	A	L	R	I	D	P	L	A	L	A	R	-	-	-	-	-	-	G	E	A	V	A	D	A	A	L	A	F	A	A	G	H	G	E	P	V	L	I	Y	A	T	S	S	P	D	E	V	K	A	V	Q	A	E	L	G	V	E	R	A	G	H	L	V	E	Q	C	L	A	T	V	A	A	G	L	L	A	R	-	G	T	R	R	F	V	V	A	G	G	E	T	S	G	A	V	V	Q	A	L	G	V	R	A	L	R	I	G	A	Q	I	A	P	G	V	P	A	T	V	T	L	-	D	A	-	K	P	L	A	L	A	L	K	S	G	N	F	G	G	P	D	F	F	D	E	A	L	R	Q	L	G	G	H