PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1yqea1  (   1 )              mkLVVCSesdtAGqnIkdnLltfadFeekdvg--eFkLyl
d2gfqa1  ( -11 )    ssgrenlyFqghKVIttkvDkAS-nI-nkLienfgFkeTeyvFegnpVyk
                                 bbbb           aa      bbbbb    bbbbb

                             60        70        80        90        100 
d1yqea1  (  39 )    sdeFyIAETkerLiyAdhIDekLak--yidFeEILFAsrhsskdgrkIFT
d2gfqa1  (  41 )    rgdVLiLttnde-iyydylDreIenqLgfkPeIIAfAsrhsskqklpALT
                        bbbbb         aaaaa          bbbbbbbb      bbb

                             110       120       130       140       150 
d1yqea1  (  87 )    VHVSGNVGtadfgGkpysLAkPspqTMKnYVlaLrerldrkpeFeFTMEV
d2gfqa1  (  91 )    tHVTGnWgka-ygGkdesFAvAIPSA-KlSLlk-selndl--gwtvCYEA
                    bb                          aaaa            bbbb  

                             160       170       180       190       200 
d1yqea1  ( 137 )    ThhGPSeIskpSAFYEIGSteeEwkdreAAeVVAeAMldAIra--ekm-d
d2gfqa1  ( 139 )    ThhGPTeLeVpSFFIEIGSseeewindrAGeIIAeTIiyVLdnYekgrsk
                               bbbbbbbb aaaa  aaaaaaaaaaaaaaaa        

                             210       220       230       240       250 
d1yqea1  ( 184 )    wnvAVGVGgthyAprQteIMltTtFTFGHNFAkyTFehLtaeFLvkAVkl
d2gfqa1  ( 189 )    fkVAlGIGgghyApkQtkrAlegdLAFGHILPkyaQp-vsrd-vikALnr
                     bbbbbb      aaaaaaaaa  bbbbbbb 333               

                             260       270       280       290      
d1yqea1  ( 234 )    S--eAeyIIiDeksVnsaVkkiVneAaevagVevLk-SkkVkkdfrlv
d2gfqa1  ( 238 )    FgekveAIYVDwkgSrgeTrqlAksLAqelglefikd           
                          bbbb      aaaaaaaaaaaaaa  bbbb

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d1yqea1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1yqea1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Hypothetical protein AF0625	AF0625-like	Archaeoglobus fulgidus [TaxId: 2234]		view
d2gfqa1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2gfqa1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Hypothetical protein PH0006	AF0625-like	Pyrococcus horikoshii [TaxId: 53953]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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Member	Chain	UniProtKB	GO term
d1yqea1	A	O29630	GO:0008270
d1yqea1	A	O29630	GO:0016787
d1yqea1	A	O29630	GO:0016788
d1yqea1	A	O29630	GO:0019478
d1yqea1	A	O29630	GO:0046872
d1yqea1	A	O29630	GO:0051499
d1yqea1	A	O29630	GO:0106074
d2gfqa1	A	O57774	GO:0008270
d2gfqa1	A	O57774	GO:0016787
d2gfqa1	A	O57774	GO:0016788
d2gfqa1	A	O57774	GO:0019478
d2gfqa1	A	O57774	GO:0046872
d2gfqa1	A	O57774	GO:0051499
d2gfqa1	A	O57774	GO:0106074

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