PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d2ppva-  (   3 )    qnVVLIGGgtgLsvLArgLre-fpI-dItAIVTVA-dnggsTgkIRdvdi
d3c3da1  (   2 )       IIFSGgtgTPkLLDGLkeilpeeeLtVVVNtAedlwvs-------gn
                        bbb   aaaaaaaaa         bbbb                  

                             60        70        80        90        100 
d2ppva-  (  52 )    PAPgdIRnVIaaLSdsesilTqlFq--yrfg--en----------qvdGh
d3c3da1  (  42 )    liSpdLDtVLYLFsdqIdrkrwwgIenDtfgtyerkelgieeglkLGdrd
                       aaaaaaaaa                                      

                             110       120       130       140       150 
d2ppva-  (  88 )    SlGNlvIagtnitn-dFghAIkelskvLnIkgqVipSTnasVqLNAvdge
d3c3da1  (  93 )    raTHiiRSniirdgasltdSTvkLsslfgIkAnILPS-ddpVsTyIetae
                     aaaaaaa        aaaaaaaaaaa     bbb       bbbbb   

                             160       170       180       190       200 
d2ppva-  ( 140 )    ivhgetnIpid--------rVfLep-sdvep-neAieaLeqAdLIVLGpg
d3c3da1  ( 143 )    -gihfqdFwigkrGePdVrgVdirgvseAsiSpkVleaFekeenILIGpS
                                       bbbbb         aaaaaaaa  bbbb   

                             210       220       230       240       250 
d2ppva-  ( 186 )    sLYTsVISNLCVgIseALlrtsApKLYVSnvtq--------pgETdn--y
d3c3da1  ( 193 )    nPiTsIGPiIslpgrelLkk--kkVVAVSpIignapvsgpagkLpacgie
                          aaaa     aaaa     bbbb                      

                             260       270       280       290       300 
d2ppva-  ( 228 )    dVkeHIdALtrqVgepfIdfViCssesYsdVlqynspVavhLdsgIrvlt
d3c3da1  ( 243 )    vssgVAeyYq-----dFLdvFVFDerdradefafer-------lgChAsr
                        aaaaa          bbb                        bbb 

                             310       320       330    
d2ppva-  ( 288 )    asnLVeisnehyvrhntkvLSkIyeLaleltstifp
d3c3da1  ( 282 )    a-dTlt---------stekskelAeiVvqaf     
                                    aaaaa  aaaaaaa

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d2ppva- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2ppva- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Staphylococcus epidermidis [TaxId: 176280]		view
d3c3da1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d3c3da1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	LPPG:FO 2-phospho-L-lactate transferase CofD	CofD-like	Methanosarcina mazei [TaxId: 2209]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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Q	N	V	V	L	I	G	G	G	T	G	L	S	V	L	A	R	G	L	R	E	-	F	P	I	-	D	I	T	A	I	V	T	V	A	-	D	N	G	G	S	T	G	K	I	R	D	V	D	I	P	A	P	G	D	I	R	N	V	I	A	A	L	S	D	S	E	S	I	L	T	Q	L	F	Q	-	-	Y	R	F	G	-	-	E	N	-	-	-	-	-	-	-	-	-	-	Q	V	D	G	H	S	L	G	N	L	V	I	A	G	T	N	I	T	N	-	D	F	G	H	A	I	K	E	L	S	K	V	L	N	I	K	G	Q	V	I	P	S	T	N	A	S	V	Q	L	N	A	V	D	G	E	I	V	H	G	E	T	N	I	P	I	D	-	-	-	-	-	-	-	-	R	V	F	L	E	P	-	S	D	V	E	P	-	N	E	A	I	E	A	L	E	Q	A	D	L	I	V	L	G	P	G	S	L	Y	T	S	V	I	S	N	L	C	V	G	I	S	E	A	L	L	R	T	S	A	P	K	L	Y	V	S	N	V	T	Q	-	-	-	-	-	-	-	-	P	G	E	T	D	N	-	-	Y	D	V	K	E	H	I	D	A	L	T	R	Q	V	G	E	P	F	I	D	F	V	I	C	S	S	E	S	Y	S	D	V	L	Q	Y	N	S	P	V	A	V	H	L	D	S	G	I	R	V	L	T	A	S	N	L	V	E	I	S	N	E	H	Y	V	R	H	N	T	K	V	L	S	K	I	Y	E	L	A	L	E	L	T	S	T	I	F	P
-	-	-	I	I	F	S	G	G	T	G	T	P	K	L	L	D	G	L	K	E	I	L	P	E	E	E	L	T	V	V	V	N	T	A	E	D	L	W	V	S	-	-	-	-	-	-	-	G	N	L	I	S	P	D	L	D	T	V	L	Y	L	F	S	D	Q	I	D	R	K	R	W	W	G	I	E	N	D	T	F	G	T	Y	E	R	K	E	L	G	I	E	E	G	L	K	L	G	D	R	D	R	A	T	H	I	I	R	S	N	I	I	R	D	G	A	S	L	T	D	S	T	V	K	L	S	S	L	F	G	I	K	A	N	I	L	P	S	-	D	D	P	V	S	T	Y	I	E	T	A	E	-	G	I	H	F	Q	D	F	W	I	G	K	R	G	E	P	D	V	R	G	V	D	I	R	G	V	S	E	A	S	I	S	P	K	V	L	E	A	F	E	K	E	E	N	I	L	I	G	P	S	N	P	I	T	S	I	G	P	I	I	S	L	P	G	R	E	L	L	K	K	-	-	K	K	V	V	A	V	S	P	I	I	G	N	A	P	V	S	G	P	A	G	K	L	P	A	C	G	I	E	V	S	S	G	V	A	E	Y	Y	Q	-	-	-	-	-	D	F	L	D	V	F	V	F	D	E	R	D	R	A	D	E	F	A	F	E	R	-	-	-	-	-	-	-	L	G	C	H	A	S	R	A	-	D	T	L	T	-	-	-	-	-	-	-	-	-	S	T	E	K	S	K	E	L	A	E	I	V	V	Q	A	F	-	-	-	-	-

Member	Chain	UniProtKB	GO term

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Q	N	V	V	L	I	G	G	G	T	G	L	S	V	L	A	R	G	L	R	E	-	F	P	I	-	D	I	T	A	I	V	T	V	A	-	D	N	G	G	S	T	G	K	I	R	D	V	D	I	P	A	P	G	D	I	R	N	V	I	A	A	L	S	D	S	E	S	I	L	T	Q	L	F	Q	-	-	Y	R	F	G	-	-	E	N	-	-	-	-	-	-	-	-	-	-	Q	V	D	G	H	S	L	G	N	L	V	I	A	G	T	N	I	T	N	-	D	F	G	H	A	I	K	E	L	S	K	V	L	N	I	K	G	Q	V	I	P	S	T	N	A	S	V	Q	L	N	A	V	D	G	E	I	V	H	G	E	T	N	I	P	I	D	-	-	-	-	-	-	-	-	R	V	F	L	E	P	-	S	D	V	E	P	-	N	E	A	I	E	A	L	E	Q	A	D	L	I	V	L	G	P	G	S	L	Y	T	S	V	I	S	N	L	C	V	G	I	S	E	A	L	L	R	T	S	A	P	K	L	Y	V	S	N	V	T	Q	-	-	-	-	-	-	-	-	P	G	E	T	D	N	-	-	Y	D	V	K	E	H	I	D	A	L	T	R	Q	V	G	E	P	F	I	D	F	V	I	C	S	S	E	S	Y	S	D	V	L	Q	Y	N	S	P	V	A	V	H	L	D	S	G	I	R	V	L	T	A	S	N	L	V	E	I	S	N	E	H	Y	V	R	H	N	T	K	V	L	S	K	I	Y	E	L	A	L	E	L	T	S	T	I	F	P
-	-	-	I	I	F	S	G	G	T	G	T	P	K	L	L	D	G	L	K	E	I	L	P	E	E	E	L	T	V	V	V	N	T	A	E	D	L	W	V	S	-	-	-	-	-	-	-	G	N	L	I	S	P	D	L	D	T	V	L	Y	L	F	S	D	Q	I	D	R	K	R	W	W	G	I	E	N	D	T	F	G	T	Y	E	R	K	E	L	G	I	E	E	G	L	K	L	G	D	R	D	R	A	T	H	I	I	R	S	N	I	I	R	D	G	A	S	L	T	D	S	T	V	K	L	S	S	L	F	G	I	K	A	N	I	L	P	S	-	D	D	P	V	S	T	Y	I	E	T	A	E	-	G	I	H	F	Q	D	F	W	I	G	K	R	G	E	P	D	V	R	G	V	D	I	R	G	V	S	E	A	S	I	S	P	K	V	L	E	A	F	E	K	E	E	N	I	L	I	G	P	S	N	P	I	T	S	I	G	P	I	I	S	L	P	G	R	E	L	L	K	K	-	-	K	K	V	V	A	V	S	P	I	I	G	N	A	P	V	S	G	P	A	G	K	L	P	A	C	G	I	E	V	S	S	G	V	A	E	Y	Y	Q	-	-	-	-	-	D	F	L	D	V	F	V	F	D	E	R	D	R	A	D	E	F	A	F	E	R	-	-	-	-	-	-	-	L	G	C	H	A	S	R	A	-	D	T	L	T	-	-	-	-	-	-	-	-	-	S	T	E	K	S	K	E	L	A	E	I	V	V	Q	A	F	-	-	-	-	-

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Q	N	V	V	L	I	G	G	G	T	G	L	S	V	L	A	R	G	L	R	E	-	F	P	I	-	D	I	T	A	I	V	T	V	A	-	D	N	G	G	S	T	G	K	I	R	D	V	D	I	P	A	P	G	D	I	R	N	V	I	A	A	L	S	D	S	E	S	I	L	T	Q	L	F	Q	-	-	Y	R	F	G	-	-	E	N	-	-	-	-	-	-	-	-	-	-	Q	V	D	G	H	S	L	G	N	L	V	I	A	G	T	N	I	T	N	-	D	F	G	H	A	I	K	E	L	S	K	V	L	N	I	K	G	Q	V	I	P	S	T	N	A	S	V	Q	L	N	A	V	D	G	E	I	V	H	G	E	T	N	I	P	I	D	-	-	-	-	-	-	-	-	R	V	F	L	E	P	-	S	D	V	E	P	-	N	E	A	I	E	A	L	E	Q	A	D	L	I	V	L	G	P	G	S	L	Y	T	S	V	I	S	N	L	C	V	G	I	S	E	A	L	L	R	T	S	A	P	K	L	Y	V	S	N	V	T	Q	-	-	-	-	-	-	-	-	P	G	E	T	D	N	-	-	Y	D	V	K	E	H	I	D	A	L	T	R	Q	V	G	E	P	F	I	D	F	V	I	C	S	S	E	S	Y	S	D	V	L	Q	Y	N	S	P	V	A	V	H	L	D	S	G	I	R	V	L	T	A	S	N	L	V	E	I	S	N	E	H	Y	V	R	H	N	T	K	V	L	S	K	I	Y	E	L	A	L	E	L	T	S	T	I	F	P
-	-	-	I	I	F	S	G	G	T	G	T	P	K	L	L	D	G	L	K	E	I	L	P	E	E	E	L	T	V	V	V	N	T	A	E	D	L	W	V	S	-	-	-	-	-	-	-	G	N	L	I	S	P	D	L	D	T	V	L	Y	L	F	S	D	Q	I	D	R	K	R	W	W	G	I	E	N	D	T	F	G	T	Y	E	R	K	E	L	G	I	E	E	G	L	K	L	G	D	R	D	R	A	T	H	I	I	R	S	N	I	I	R	D	G	A	S	L	T	D	S	T	V	K	L	S	S	L	F	G	I	K	A	N	I	L	P	S	-	D	D	P	V	S	T	Y	I	E	T	A	E	-	G	I	H	F	Q	D	F	W	I	G	K	R	G	E	P	D	V	R	G	V	D	I	R	G	V	S	E	A	S	I	S	P	K	V	L	E	A	F	E	K	E	E	N	I	L	I	G	P	S	N	P	I	T	S	I	G	P	I	I	S	L	P	G	R	E	L	L	K	K	-	-	K	K	V	V	A	V	S	P	I	I	G	N	A	P	V	S	G	P	A	G	K	L	P	A	C	G	I	E	V	S	S	G	V	A	E	Y	Y	Q	-	-	-	-	-	D	F	L	D	V	F	V	F	D	E	R	D	R	A	D	E	F	A	F	E	R	-	-	-	-	-	-	-	L	G	C	H	A	S	R	A	-	D	T	L	T	-	-	-	-	-	-	-	-	-	S	T	E	K	S	K	E	L	A	E	I	V	V	Q	A	F	-	-	-	-	-

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Q	N	V	V	L	I	G	G	G	T	G	L	S	V	L	A	R	G	L	R	E	-	F	P	I	-	D	I	T	A	I	V	T	V	A	-	D	N	G	G	S	T	G	K	I	R	D	V	D	I	P	A	P	G	D	I	R	N	V	I	A	A	L	S	D	S	E	S	I	L	T	Q	L	F	Q	-	-	Y	R	F	G	-	-	E	N	-	-	-	-	-	-	-	-	-	-	Q	V	D	G	H	S	L	G	N	L	V	I	A	G	T	N	I	T	N	-	D	F	G	H	A	I	K	E	L	S	K	V	L	N	I	K	G	Q	V	I	P	S	T	N	A	S	V	Q	L	N	A	V	D	G	E	I	V	H	G	E	T	N	I	P	I	D	-	-	-	-	-	-	-	-	R	V	F	L	E	P	-	S	D	V	E	P	-	N	E	A	I	E	A	L	E	Q	A	D	L	I	V	L	G	P	G	S	L	Y	T	S	V	I	S	N	L	C	V	G	I	S	E	A	L	L	R	T	S	A	P	K	L	Y	V	S	N	V	T	Q	-	-	-	-	-	-	-	-	P	G	E	T	D	N	-	-	Y	D	V	K	E	H	I	D	A	L	T	R	Q	V	G	E	P	F	I	D	F	V	I	C	S	S	E	S	Y	S	D	V	L	Q	Y	N	S	P	V	A	V	H	L	D	S	G	I	R	V	L	T	A	S	N	L	V	E	I	S	N	E	H	Y	V	R	H	N	T	K	V	L	S	K	I	Y	E	L	A	L	E	L	T	S	T	I	F	P
-	-	-	I	I	F	S	G	G	T	G	T	P	K	L	L	D	G	L	K	E	I	L	P	E	E	E	L	T	V	V	V	N	T	A	E	D	L	W	V	S	-	-	-	-	-	-	-	G	N	L	I	S	P	D	L	D	T	V	L	Y	L	F	S	D	Q	I	D	R	K	R	W	W	G	I	E	N	D	T	F	G	T	Y	E	R	K	E	L	G	I	E	E	G	L	K	L	G	D	R	D	R	A	T	H	I	I	R	S	N	I	I	R	D	G	A	S	L	T	D	S	T	V	K	L	S	S	L	F	G	I	K	A	N	I	L	P	S	-	D	D	P	V	S	T	Y	I	E	T	A	E	-	G	I	H	F	Q	D	F	W	I	G	K	R	G	E	P	D	V	R	G	V	D	I	R	G	V	S	E	A	S	I	S	P	K	V	L	E	A	F	E	K	E	E	N	I	L	I	G	P	S	N	P	I	T	S	I	G	P	I	I	S	L	P	G	R	E	L	L	K	K	-	-	K	K	V	V	A	V	S	P	I	I	G	N	A	P	V	S	G	P	A	G	K	L	P	A	C	G	I	E	V	S	S	G	V	A	E	Y	Y	Q	-	-	-	-	-	D	F	L	D	V	F	V	F	D	E	R	D	R	A	D	E	F	A	F	E	R	-	-	-	-	-	-	-	L	G	C	H	A	S	R	A	-	D	T	L	T	-	-	-	-	-	-	-	-	-	S	T	E	K	S	K	E	L	A	E	I	V	V	Q	A	F	-	-	-	-	-