PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d2d9ra1  (  20 )    spiefdaiIrqvpddaAyVeIpfdVktvygkgrvrVnAtFdgypytgyIv
d2nwta1  (   1 )    mpkiieavyen-----gvfkplqkv--dlke---gervkik-lelk----
                          bb b       bbb                              

                             60        70        80        90        100 
d2d9ra1  (  71 )    rglpcHiLgLrqdIrraigkqpgdsVyVtLlpl                 
d2nwta1  (  36 )    -----------------------------vepidlgepvsveeikkirdg
                                                                      

                         
d2d9ra1                  
d2nwta1  (  57 )    twmss

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d2d9ra1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2d9ra1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Hypothetical protein PG0164	PG0164-like	Porphyromonas gingivalis [TaxId: 837]		view
d2nwta1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2nwta1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Uncharacterized protein AF2212	AF2212-like	Archaeoglobus fulgidus [TaxId: 2234]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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S	P	I	E	F	D	A	I	I	R	Q	V	P	D	D	A	A	Y	V	E	I	P	F	D	V	K	T	V	Y	G	K	G	R	V	R	V	N	A	T	F	D	G	Y	P	Y	T	G	Y	I	V	R	G	L	P	C	H	I	L	G	L	R	Q	D	I	R	R	A	I	G	K	Q	P	G	D	S	V	Y	V	T	L	L	P	L	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
M	P	K	I	I	E	A	V	Y	E	N	-	-	-	-	-	G	V	F	K	P	L	Q	K	V	-	-	D	L	K	E	-	-	-	G	E	R	V	K	I	K	-	L	E	L	K	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	V	E	P	I	D	L	G	E	P	V	S	V	E	E	I	K	K	I	R	D	G	T	W	M	S	S

Member	Chain	UniProtKB	GO term

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S	P	I	E	F	D	A	I	I	R	Q	V	P	D	D	A	A	Y	V	E	I	P	F	D	V	K	T	V	Y	G	K	G	R	V	R	V	N	A	T	F	D	G	Y	P	Y	T	G	Y	I	V	R	G	L	P	C	H	I	L	G	L	R	Q	D	I	R	R	A	I	G	K	Q	P	G	D	S	V	Y	V	T	L	L	P	L	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
M	P	K	I	I	E	A	V	Y	E	N	-	-	-	-	-	G	V	F	K	P	L	Q	K	V	-	-	D	L	K	E	-	-	-	G	E	R	V	K	I	K	-	L	E	L	K	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	V	E	P	I	D	L	G	E	P	V	S	V	E	E	I	K	K	I	R	D	G	T	W	M	S	S

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S	P	I	E	F	D	A	I	I	R	Q	V	P	D	D	A	A	Y	V	E	I	P	F	D	V	K	T	V	Y	G	K	G	R	V	R	V	N	A	T	F	D	G	Y	P	Y	T	G	Y	I	V	R	G	L	P	C	H	I	L	G	L	R	Q	D	I	R	R	A	I	G	K	Q	P	G	D	S	V	Y	V	T	L	L	P	L	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
M	P	K	I	I	E	A	V	Y	E	N	-	-	-	-	-	G	V	F	K	P	L	Q	K	V	-	-	D	L	K	E	-	-	-	G	E	R	V	K	I	K	-	L	E	L	K	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	V	E	P	I	D	L	G	E	P	V	S	V	E	E	I	K	K	I	R	D	G	T	W	M	S	S

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S	P	I	E	F	D	A	I	I	R	Q	V	P	D	D	A	A	Y	V	E	I	P	F	D	V	K	T	V	Y	G	K	G	R	V	R	V	N	A	T	F	D	G	Y	P	Y	T	G	Y	I	V	R	G	L	P	C	H	I	L	G	L	R	Q	D	I	R	R	A	I	G	K	Q	P	G	D	S	V	Y	V	T	L	L	P	L	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
M	P	K	I	I	E	A	V	Y	E	N	-	-	-	-	-	G	V	F	K	P	L	Q	K	V	-	-	D	L	K	E	-	-	-	G	E	R	V	K	I	K	-	L	E	L	K	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	V	E	P	I	D	L	G	E	P	V	S	V	E	E	I	K	K	I	R	D	G	T	W	M	S	S