PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1zsoa1  (   3 )      ntvVrIkAeLenVkrLfCd-deYlWiFnIrDstssltrd-nIqFrktd
d5zrta-  (   1 )    mgkIALqLkAtLenItnLrPvgedFrWyLkMkCgncgeisdkwqyIrlmd
                       bbbbbbbbbb bbbbb       bbbbbbb          bbb    

                             60        70        80        90        100 
d1zsoa1  (  49 )    ileipnsrgtAnf-ikwteypkyStInFvntknsCsYeevnnnewrdFAs
d5zrta-  (  51 )    svaLkggrgsASmvqkcklcarensIeIls-stikpYnaednenfktIVe
                     bb      bb             bbbbb         333    bbbbb

                             110       120       130       140       150 
d1zsoa1  (  99 )    FeCrgIeLidFfPsnnFIVeDtk-gklyydVnLsdqnwcdyneehe-cVG
d5zrta-  ( 100 )    FecrgLePvdFqPqagFaAeGvesgtafsdInLqekdwtdyDekaqesVG
                    bbb  bbbbbb     bbbbb     bbbbb      bbb        bb

                             160 
d1zsoa1  ( 148 )    IynLeyeVn  
d5zrta-  ( 150 )    IyeVthqfvkc
                    bbbbbbbbb

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d1zsoa1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1zsoa1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Hypothetical protein MAL13P1.257	MAL13P1.257-like	Malaria parasite (Plasmodium falciparum) [TaxId: 5833]		view
d5zrta- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d5zrta- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Human (Homo sapiens) [TaxId: 9606]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

									10										20										30										40										50										60										70										80										90										100										110										120										130										140										150										160
-	-	N	T	V	V	R	I	K	A	E	L	E	N	V	K	R	L	F	C	D	-	D	E	Y	L	W	I	F	N	I	R	D	S	T	S	S	L	T	R	D	-	N	I	Q	F	R	K	T	D	I	L	E	I	P	N	S	R	G	T	A	N	F	-	I	K	W	T	E	Y	P	K	Y	S	T	I	N	F	V	N	T	K	N	S	C	S	Y	E	E	V	N	N	N	E	W	R	D	F	A	S	F	E	C	R	G	I	E	L	I	D	F	F	P	S	N	N	F	I	V	E	D	T	K	-	G	K	L	Y	Y	D	V	N	L	S	D	Q	N	W	C	D	Y	N	E	E	H	E	-	C	V	G	I	Y	N	L	E	Y	E	V	N	-	-
M	G	K	I	A	L	Q	L	K	A	T	L	E	N	I	T	N	L	R	P	V	G	E	D	F	R	W	Y	L	K	M	K	C	G	N	C	G	E	I	S	D	K	W	Q	Y	I	R	L	M	D	S	V	A	L	K	G	G	R	G	S	A	S	M	V	Q	K	C	K	L	C	A	R	E	N	S	I	E	I	L	S	-	S	T	I	K	P	Y	N	A	E	D	N	E	N	F	K	T	I	V	E	F	E	C	R	G	L	E	P	V	D	F	Q	P	Q	A	G	F	A	A	E	G	V	E	S	G	T	A	F	S	D	I	N	L	Q	E	K	D	W	T	D	Y	D	E	K	A	Q	E	S	V	G	I	Y	E	V	T	H	Q	F	V	K	C

Member	Chain	UniProtKB	GO term
d1zsoa1	A	Q8IDI8	GO:0008270

									10										20										30										40										50										60										70										80										90										100										110										120										130										140										150										160
-	-	N	T	V	V	R	I	K	A	E	L	E	N	V	K	R	L	F	C	D	-	D	E	Y	L	W	I	F	N	I	R	D	S	T	S	S	L	T	R	D	-	N	I	Q	F	R	K	T	D	I	L	E	I	P	N	S	R	G	T	A	N	F	-	I	K	W	T	E	Y	P	K	Y	S	T	I	N	F	V	N	T	K	N	S	C	S	Y	E	E	V	N	N	N	E	W	R	D	F	A	S	F	E	C	R	G	I	E	L	I	D	F	F	P	S	N	N	F	I	V	E	D	T	K	-	G	K	L	Y	Y	D	V	N	L	S	D	Q	N	W	C	D	Y	N	E	E	H	E	-	C	V	G	I	Y	N	L	E	Y	E	V	N	-	-
M	G	K	I	A	L	Q	L	K	A	T	L	E	N	I	T	N	L	R	P	V	G	E	D	F	R	W	Y	L	K	M	K	C	G	N	C	G	E	I	S	D	K	W	Q	Y	I	R	L	M	D	S	V	A	L	K	G	G	R	G	S	A	S	M	V	Q	K	C	K	L	C	A	R	E	N	S	I	E	I	L	S	-	S	T	I	K	P	Y	N	A	E	D	N	E	N	F	K	T	I	V	E	F	E	C	R	G	L	E	P	V	D	F	Q	P	Q	A	G	F	A	A	E	G	V	E	S	G	T	A	F	S	D	I	N	L	Q	E	K	D	W	T	D	Y	D	E	K	A	Q	E	S	V	G	I	Y	E	V	T	H	Q	F	V	K	C

									10										20										30										40										50										60										70										80										90										100										110										120										130										140										150										160
-	-	N	T	V	V	R	I	K	A	E	L	E	N	V	K	R	L	F	C	D	-	D	E	Y	L	W	I	F	N	I	R	D	S	T	S	S	L	T	R	D	-	N	I	Q	F	R	K	T	D	I	L	E	I	P	N	S	R	G	T	A	N	F	-	I	K	W	T	E	Y	P	K	Y	S	T	I	N	F	V	N	T	K	N	S	C	S	Y	E	E	V	N	N	N	E	W	R	D	F	A	S	F	E	C	R	G	I	E	L	I	D	F	F	P	S	N	N	F	I	V	E	D	T	K	-	G	K	L	Y	Y	D	V	N	L	S	D	Q	N	W	C	D	Y	N	E	E	H	E	-	C	V	G	I	Y	N	L	E	Y	E	V	N	-	-
M	G	K	I	A	L	Q	L	K	A	T	L	E	N	I	T	N	L	R	P	V	G	E	D	F	R	W	Y	L	K	M	K	C	G	N	C	G	E	I	S	D	K	W	Q	Y	I	R	L	M	D	S	V	A	L	K	G	G	R	G	S	A	S	M	V	Q	K	C	K	L	C	A	R	E	N	S	I	E	I	L	S	-	S	T	I	K	P	Y	N	A	E	D	N	E	N	F	K	T	I	V	E	F	E	C	R	G	L	E	P	V	D	F	Q	P	Q	A	G	F	A	A	E	G	V	E	S	G	T	A	F	S	D	I	N	L	Q	E	K	D	W	T	D	Y	D	E	K	A	Q	E	S	V	G	I	Y	E	V	T	H	Q	F	V	K	C

									10										20										30										40										50										60										70										80										90										100										110										120										130										140										150										160
-	-	N	T	V	V	R	I	K	A	E	L	E	N	V	K	R	L	F	C	D	-	D	E	Y	L	W	I	F	N	I	R	D	S	T	S	S	L	T	R	D	-	N	I	Q	F	R	K	T	D	I	L	E	I	P	N	S	R	G	T	A	N	F	-	I	K	W	T	E	Y	P	K	Y	S	T	I	N	F	V	N	T	K	N	S	C	S	Y	E	E	V	N	N	N	E	W	R	D	F	A	S	F	E	C	R	G	I	E	L	I	D	F	F	P	S	N	N	F	I	V	E	D	T	K	-	G	K	L	Y	Y	D	V	N	L	S	D	Q	N	W	C	D	Y	N	E	E	H	E	-	C	V	G	I	Y	N	L	E	Y	E	V	N	-	-
M	G	K	I	A	L	Q	L	K	A	T	L	E	N	I	T	N	L	R	P	V	G	E	D	F	R	W	Y	L	K	M	K	C	G	N	C	G	E	I	S	D	K	W	Q	Y	I	R	L	M	D	S	V	A	L	K	G	G	R	G	S	A	S	M	V	Q	K	C	K	L	C	A	R	E	N	S	I	E	I	L	S	-	S	T	I	K	P	Y	N	A	E	D	N	E	N	F	K	T	I	V	E	F	E	C	R	G	L	E	P	V	D	F	Q	P	Q	A	G	F	A	A	E	G	V	E	S	G	T	A	F	S	D	I	N	L	Q	E	K	D	W	T	D	Y	D	E	K	A	Q	E	S	V	G	I	Y	E	V	T	H	Q	F	V	K	C