PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1yu0a1  (   5 )    vqfrggttaqhatftGaareiTvDtdkntvVvHdgatagGfpla------
d1zrua3  (   2 )                                        tiknftfgsnndGk
                                                                      

                             60        70        80        90        100 
d1yu0a1  (  49 )    -rhdlvk-----tafikadksavAFtrtgnatAsIkagTiVeVngklvqF
d1zrua3  (  26 )    lymmltgMdyrtIrrkdws----splnta-lnVqYt-nTsIiAGGRyFeL
                                  bb         bb    bbbb   bbbbb  bbbbb

                             110       120       130       140       150 
d1yu0a1  (  93 )    tadtaItmpaLtagtdYAIYVCdd-------gtVrAdsnfs----aPtgy
d1zrua3  (  70 )    l-netvaLk---gdsvNyIHAnIdltqtanPVsLsAetannsnGvdINng
                       bb          bbbbbbb           bbbb             

                             160       170       180       190 
d1yu0a1  ( 132 )    tsttArkVGGFhyapgsnaaaqaggnttaqIneysLwdi  
d1zrua3  ( 116 )    sgvLkVCFDiVtTsg-------------tgVt---stkpiv
                        bbbbbbbbb                 b     bb

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d1yu0a1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1yu0a1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Major tropism determinant (Mtd), N-terminal domain	Mtd domain-like	Bordetella phage bpp-1 [TaxId: 194699]		view
d1zrua3 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1zrua3 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Receptor binding protein, rbp, N-terminal domain	Lactophage receptor-binding protein N-terminal domain	Lactococcus lactis phage p2 [TaxId: 100641]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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Member	Chain	UniProtKB	GO term
d1yu0a1	A	Q775D6	GO:0005515
d1yu0a1	A	Q775D6	GO:0046718
d1yu0a1	A	Q775D6	GO:0098015
d1yu0a1	A	Q775D6	GO:0098024
d1yu0a1	A	Q775D6	GO:0098671
d1yu0a1	A	Q775D6	GO:0098678
d1zrua3	A	Q71AW2	GO:0007155
d1zrua3	A	Q71AW2	GO:0019058
d1zrua3	A	Q71AW2	GO:0019062
d1zrua3	A	Q71AW2	GO:0046718
d1zrua3	A	Q71AW2	GO:0098015
d1zrua3	A	Q71AW2	GO:0098025
d1zrua3	A	Q71AW2	GO:0098670
d1zrua3	A	Q71AW2	GO:0007155
d1zrua3	A	Q71AW2	GO:0019058
d1zrua3	A	Q71AW2	GO:0019062
d1zrua3	A	Q71AW2	GO:0046718
d1zrua3	A	Q71AW2	GO:0098015
d1zrua3	A	Q71AW2	GO:0098025
d1zrua3	A	Q71AW2	GO:0098670

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