PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d2gtlm1  ( 102 )    lnIThvgssYtglAtWtsçedlnpDhAiVtItaAhrksffpnrVwLrAtL
d2gtln1  ( 102 )    tsvVkagnvFsgtStWhgçlaredhvTrItItaskrrkfftarIwLrAlV
d2gtlo1  ( 101 )      pTkagdkFiGdvcfDhçtkrrpehMtLaFesssiaafftpiadLhVhI
                            bbbbbbbb         bbbbbbbbb           bbbbb

                             60        70        80        90        100 
d2gtlm1  ( 152 )    sYeldeh-dhtvsttqLrgfYnfgkreLlLaPlkgqegyGViÇdFnlgdd
d2gtln1  ( 152 )    eSeLerhgenvtssfnAkgyYnfasrrLiLlptdhddhlAVvÇsFnrgdn
d2gtlo1  ( 149 )    eIesetdedesevsmpadGeYsfadhrLtIhppee-dglGLvGeFdgynf
                    b b        b  bbbbbbbb    bbbb          bbbb      

                             110       120   
d2gtlm1  ( 202 )    dhAdÇkIVvpsslfvÇAhFnAqry 
d2gtln1  ( 203 )    erAeÇhRVteatlhqÇAdLfVtlee
d2gtlo1  ( 198 )    drFvGhiVhelseevçAeFiFhr  
                     bbbbbbb      bbbbbbbb

Domains
Outliers

Domain ID	Name	Family	Source	STRING-DB
d2gtlm1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2gtlm1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Hemoglobin linker chain l1	Extracellular hemoglobin linker subunit, receptor domain	Common earthworm (Lumbricus terrestris) [TaxId: 6398]	view
d2gtln1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2gtln1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Extracellular hemoglobin linker l2 subunit	Extracellular hemoglobin linker subunit, receptor domain	Common earthworm (Lumbricus terrestris) [TaxId: 6398]	view
d2gtlo1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2gtlo1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Extracellular hemoglobin linker l3 subunit	Extracellular hemoglobin linker subunit, receptor domain	Common earthworm (Lumbricus terrestris) [TaxId: 6398]	view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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Show entries

Search:

Member	Chain	UniProtKB	GO term
d2gtlm1	M	P13579	GO:0046872
d2gtlm1	M	P02218	GO:0046872
d2gtlm1	M	P11069	GO:0046872
d2gtlm1	M	O61233	GO:0046872
d2gtlm1	M	Q9GV76	GO:0046872
d2gtlm1	M	Q2I743	GO:0046872
d2gtlm1	M	Q2I742	GO:0046872
d2gtlm1	M	P13579	GO:0046872
d2gtlm1	M	P02218	GO:0046872
d2gtlm1	M	P11069	GO:0046872

Showing 1 to 10 of 56 entries

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