PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d3e9ta1  ( 442 )      irMyFepghytvmEncgefeVrVVRrg-distyAsVeYeTqdgtAsag
d3e9ua1  ( 555 )      giFAFtdsvfeitEsvgrfeLkVmRys-gargtViVpywTendtAte-
d3fsoa1  ( 989 )     rDvvSFeqpefsvsRgdqvAripviRrvld-ggkSqvsyrtqdgtAqgn
d3gina-  ( 370 )    pvSkIfFeqgtyqclencgtvaLtIIRrggdltntVfVdfrTedgtAnag
                       bbbb   bbbbb    bbbbbbbbb       bbbbbbbb       

                             60        70        80        90        100 
d3e9ta1  ( 489 )    tdFvgrkglLsFppgvdeqrfrIeVidddvfeedecFyIrLfnpse----
d3e9ua1  ( 602 )    kDYeGargelvFennesekfIdLfIleessyekdvsFkVhIgePrlapdd
d3fsoa1  (1037 )    rDYipvegellFqpgeawkelqvkllel----qvrrFhvqlsnpkf----
d3gina-  ( 420 )    sdYeftegtvvFkpgetqkeIrVgIidddifeedknFlVhLsnVkva---
                          bbbbbb     bbbbbbb          bbbbbbbb  b     

                             110       120       130       140       150 
d3e9ta1  ( 535 )    ---------------------------gVklavpmiAtVmildd      
d3e9ua1  ( 652 )    glaakikeVekkpvqdltelDrilllskprngelttAyVrIrEsqefkat
d3fsoa1  (1089 )    ---------------------------gAhlgqphsttiiirdp      
d3gina-  ( 483 )    ---------------------------lAclgspstAtVtIfDddh    
                                                 bb    bbbbbbb        

                            
d3e9ta1                     
d3e9ua1  ( 702 )    vdklvaka
d3fsoa1                     
d3gina-

Domains
Outliers

Domain ID	Name	Family	Source	STRING-DB
d3e9ta1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d3e9ta1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Fruit fly (Drosophila melanogaster) [TaxId: 7227]	view
d3e9ua1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d3e9ua1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Fruit fly (Drosophila melanogaster) [TaxId: 7227]	view
d3fsoa1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d3fsoa1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Human (Homo sapiens) [TaxId: 9606]	view
d3gina- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d3gina- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	CalX-beta domain	Canis lupus [TaxId: 9615]	view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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-	-	G	I	F	A	F	T	D	S	V	F	E	I	T	E	S	V	G	R	F	E	L	K	V	M	R	Y	S	-	G	A	R	G	T	V	I	V	P	Y	W	T	E	N	D	T	A	T	E	-	K	D	Y	E	G	A	R	G	E	L	V	F	E	N	N	E	S	E	K	F	I	D	L	F	I	L	E	E	S	S	Y	E	K	D	V	S	F	K	V	H	I	G	E	P	R	L	A	P	D	D	G	L	A	A	K	I	K	E	V	E	K	K	P	V	Q	D	L	T	E	L	D	R	I	L	L	L	S	K	P	R	N	G	E	L	T	T	A	Y	V	R	I	R	E	S	Q	E	F	K	A	T	V	D	K	L	V	A	K	A
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P	V	S	K	I	F	F	E	Q	G	T	Y	Q	C	L	E	N	C	G	T	V	A	L	T	I	I	R	R	G	G	D	L	T	N	T	V	F	V	D	F	R	T	E	D	G	T	A	N	A	G	S	D	Y	E	F	T	E	G	T	V	V	F	K	P	G	E	T	Q	K	E	I	R	V	G	I	I	D	D	D	I	F	E	E	D	K	N	F	L	V	H	L	S	N	V	K	V	A	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	L	A	C	L	G	S	P	S	T	A	T	V	T	I	F	D	D	D	H	-	-	-	-	-	-	-	-	-	-	-	-

Member	Chain	UniProtKB	GO term

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-	-	G	I	F	A	F	T	D	S	V	F	E	I	T	E	S	V	G	R	F	E	L	K	V	M	R	Y	S	-	G	A	R	G	T	V	I	V	P	Y	W	T	E	N	D	T	A	T	E	-	K	D	Y	E	G	A	R	G	E	L	V	F	E	N	N	E	S	E	K	F	I	D	L	F	I	L	E	E	S	S	Y	E	K	D	V	S	F	K	V	H	I	G	E	P	R	L	A	P	D	D	G	L	A	A	K	I	K	E	V	E	K	K	P	V	Q	D	L	T	E	L	D	R	I	L	L	L	S	K	P	R	N	G	E	L	T	T	A	Y	V	R	I	R	E	S	Q	E	F	K	A	T	V	D	K	L	V	A	K	A
-	R	D	V	V	S	F	E	Q	P	E	F	S	V	S	R	G	D	Q	V	A	R	I	P	V	I	R	R	V	L	D	-	G	G	K	S	Q	V	S	Y	R	T	Q	D	G	T	A	Q	G	N	R	D	Y	I	P	V	E	G	E	L	L	F	Q	P	G	E	A	W	K	E	L	Q	V	K	L	L	E	L	-	-	-	-	Q	V	R	R	F	H	V	Q	L	S	N	P	K	F	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	G	A	H	L	G	Q	P	H	S	T	T	I	I	I	R	D	P	-	-	-	-	-	-	-	-	-	-	-	-	-	-
P	V	S	K	I	F	F	E	Q	G	T	Y	Q	C	L	E	N	C	G	T	V	A	L	T	I	I	R	R	G	G	D	L	T	N	T	V	F	V	D	F	R	T	E	D	G	T	A	N	A	G	S	D	Y	E	F	T	E	G	T	V	V	F	K	P	G	E	T	Q	K	E	I	R	V	G	I	I	D	D	D	I	F	E	E	D	K	N	F	L	V	H	L	S	N	V	K	V	A	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	L	A	C	L	G	S	P	S	T	A	T	V	T	I	F	D	D	D	H	-	-	-	-	-	-	-	-	-	-	-	-

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-	-	I	R	M	Y	F	E	P	G	H	Y	T	V	M	E	N	C	G	E	F	E	V	R	V	V	R	R	G	-	D	I	S	T	Y	A	S	V	E	Y	E	T	Q	D	G	T	A	S	A	G	T	D	F	V	G	R	K	G	L	L	S	F	P	P	G	V	D	E	Q	R	F	R	I	E	V	I	D	D	D	V	F	E	E	D	E	C	F	Y	I	R	L	F	N	P	S	E	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	G	V	K	L	A	V	P	M	I	A	T	V	M	I	L	D	D	-	-	-	-	-	-	-	-	-	-	-	-	-	-
-	-	G	I	F	A	F	T	D	S	V	F	E	I	T	E	S	V	G	R	F	E	L	K	V	M	R	Y	S	-	G	A	R	G	T	V	I	V	P	Y	W	T	E	N	D	T	A	T	E	-	K	D	Y	E	G	A	R	G	E	L	V	F	E	N	N	E	S	E	K	F	I	D	L	F	I	L	E	E	S	S	Y	E	K	D	V	S	F	K	V	H	I	G	E	P	R	L	A	P	D	D	G	L	A	A	K	I	K	E	V	E	K	K	P	V	Q	D	L	T	E	L	D	R	I	L	L	L	S	K	P	R	N	G	E	L	T	T	A	Y	V	R	I	R	E	S	Q	E	F	K	A	T	V	D	K	L	V	A	K	A
-	R	D	V	V	S	F	E	Q	P	E	F	S	V	S	R	G	D	Q	V	A	R	I	P	V	I	R	R	V	L	D	-	G	G	K	S	Q	V	S	Y	R	T	Q	D	G	T	A	Q	G	N	R	D	Y	I	P	V	E	G	E	L	L	F	Q	P	G	E	A	W	K	E	L	Q	V	K	L	L	E	L	-	-	-	-	Q	V	R	R	F	H	V	Q	L	S	N	P	K	F	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	G	A	H	L	G	Q	P	H	S	T	T	I	I	I	R	D	P	-	-	-	-	-	-	-	-	-	-	-	-	-	-
P	V	S	K	I	F	F	E	Q	G	T	Y	Q	C	L	E	N	C	G	T	V	A	L	T	I	I	R	R	G	G	D	L	T	N	T	V	F	V	D	F	R	T	E	D	G	T	A	N	A	G	S	D	Y	E	F	T	E	G	T	V	V	F	K	P	G	E	T	Q	K	E	I	R	V	G	I	I	D	D	D	I	F	E	E	D	K	N	F	L	V	H	L	S	N	V	K	V	A	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	L	A	C	L	G	S	P	S	T	A	T	V	T	I	F	D	D	D	H	-	-	-	-	-	-	-	-	-	-	-	-

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-	-	G	I	F	A	F	T	D	S	V	F	E	I	T	E	S	V	G	R	F	E	L	K	V	M	R	Y	S	-	G	A	R	G	T	V	I	V	P	Y	W	T	E	N	D	T	A	T	E	-	K	D	Y	E	G	A	R	G	E	L	V	F	E	N	N	E	S	E	K	F	I	D	L	F	I	L	E	E	S	S	Y	E	K	D	V	S	F	K	V	H	I	G	E	P	R	L	A	P	D	D	G	L	A	A	K	I	K	E	V	E	K	K	P	V	Q	D	L	T	E	L	D	R	I	L	L	L	S	K	P	R	N	G	E	L	T	T	A	Y	V	R	I	R	E	S	Q	E	F	K	A	T	V	D	K	L	V	A	K	A
-	R	D	V	V	S	F	E	Q	P	E	F	S	V	S	R	G	D	Q	V	A	R	I	P	V	I	R	R	V	L	D	-	G	G	K	S	Q	V	S	Y	R	T	Q	D	G	T	A	Q	G	N	R	D	Y	I	P	V	E	G	E	L	L	F	Q	P	G	E	A	W	K	E	L	Q	V	K	L	L	E	L	-	-	-	-	Q	V	R	R	F	H	V	Q	L	S	N	P	K	F	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	G	A	H	L	G	Q	P	H	S	T	T	I	I	I	R	D	P	-	-	-	-	-	-	-	-	-	-	-	-	-	-
P	V	S	K	I	F	F	E	Q	G	T	Y	Q	C	L	E	N	C	G	T	V	A	L	T	I	I	R	R	G	G	D	L	T	N	T	V	F	V	D	F	R	T	E	D	G	T	A	N	A	G	S	D	Y	E	F	T	E	G	T	V	V	F	K	P	G	E	T	Q	K	E	I	R	V	G	I	I	D	D	D	I	F	E	E	D	K	N	F	L	V	H	L	S	N	V	K	V	A	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	L	A	C	L	G	S	P	S	T	A	T	V	T	I	F	D	D	D	H	-	-	-	-	-	-	-	-	-	-	-	-