PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d2cwya1  (   2 )                     vPdweeVlglWragryyeVhevLepywlkat--
d2ijqa1  (  14 )    gnpsgwrtdgqwehetLrrAVvhGVrLYNsgefheShdCFedEwynygrg
                                        aaaaaaaaa   aaaaaaaaaaa       

                             60        70        80        90        100 
d2cwya1  (  33 )    geerrLlqGVilLAaALhqrrl-gr--pGlrnLrkAearLegLpcpl-gL
d2ijqa1  (  64 )    nteSkFLhGMVqVAaGAykhfdfedddgMrslFrtSlqyFrgVpndYYgV
                     aaaaaaaaaaaaaaaaaaaa        aaaaaaaaaaa          

                             110       120       130       140   
d2cwya1  (  80 )    dWrsLLqeArrrLga                              
d2ijqa1  ( 114 )    dLldVrttVtnAlsdpsaLhgwqIrLdgeyptcrpeDiefAesle
                     aaaaaaaaaaaa

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d2cwya1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2cwya1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Hypothetical protein TTHA0068	TTHA0068-like	Thermus thermophilus [TaxId: 274]		view
d2ijqa1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2ijqa1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Hypothetical protein rrnAC1037	TTHA0068-like	Haloarcula marismortui [TaxId: 2238]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	V	P	D	W	E	E	V	L	G	L	W	R	A	G	R	Y	Y	E	V	H	E	V	L	E	P	Y	W	L	K	A	T	-	-	G	E	E	R	R	L	L	Q	G	V	I	L	L	A	A	A	L	H	Q	R	R	L	-	G	R	-	-	P	G	L	R	N	L	R	K	A	E	A	R	L	E	G	L	P	C	P	L	-	G	L	D	W	R	S	L	L	Q	E	A	R	R	R	L	G	A	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
G	N	P	S	G	W	R	T	D	G	Q	W	E	H	E	T	L	R	R	A	V	V	H	G	V	R	L	Y	N	S	G	E	F	H	E	S	H	D	C	F	E	D	E	W	Y	N	Y	G	R	G	N	T	E	S	K	F	L	H	G	M	V	Q	V	A	A	G	A	Y	K	H	F	D	F	E	D	D	D	G	M	R	S	L	F	R	T	S	L	Q	Y	F	R	G	V	P	N	D	Y	Y	G	V	D	L	L	D	V	R	T	T	V	T	N	A	L	S	D	P	S	A	L	H	G	W	Q	I	R	L	D	G	E	Y	P	T	C	R	P	E	D	I	E	F	A	E	S	L	E

Member	Chain	UniProtKB	GO term

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-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	V	P	D	W	E	E	V	L	G	L	W	R	A	G	R	Y	Y	E	V	H	E	V	L	E	P	Y	W	L	K	A	T	-	-	G	E	E	R	R	L	L	Q	G	V	I	L	L	A	A	A	L	H	Q	R	R	L	-	G	R	-	-	P	G	L	R	N	L	R	K	A	E	A	R	L	E	G	L	P	C	P	L	-	G	L	D	W	R	S	L	L	Q	E	A	R	R	R	L	G	A	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
G	N	P	S	G	W	R	T	D	G	Q	W	E	H	E	T	L	R	R	A	V	V	H	G	V	R	L	Y	N	S	G	E	F	H	E	S	H	D	C	F	E	D	E	W	Y	N	Y	G	R	G	N	T	E	S	K	F	L	H	G	M	V	Q	V	A	A	G	A	Y	K	H	F	D	F	E	D	D	D	G	M	R	S	L	F	R	T	S	L	Q	Y	F	R	G	V	P	N	D	Y	Y	G	V	D	L	L	D	V	R	T	T	V	T	N	A	L	S	D	P	S	A	L	H	G	W	Q	I	R	L	D	G	E	Y	P	T	C	R	P	E	D	I	E	F	A	E	S	L	E

									10										20										30										40										50										60										70										80										90										100										110										120										130										140
-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	V	P	D	W	E	E	V	L	G	L	W	R	A	G	R	Y	Y	E	V	H	E	V	L	E	P	Y	W	L	K	A	T	-	-	G	E	E	R	R	L	L	Q	G	V	I	L	L	A	A	A	L	H	Q	R	R	L	-	G	R	-	-	P	G	L	R	N	L	R	K	A	E	A	R	L	E	G	L	P	C	P	L	-	G	L	D	W	R	S	L	L	Q	E	A	R	R	R	L	G	A	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
G	N	P	S	G	W	R	T	D	G	Q	W	E	H	E	T	L	R	R	A	V	V	H	G	V	R	L	Y	N	S	G	E	F	H	E	S	H	D	C	F	E	D	E	W	Y	N	Y	G	R	G	N	T	E	S	K	F	L	H	G	M	V	Q	V	A	A	G	A	Y	K	H	F	D	F	E	D	D	D	G	M	R	S	L	F	R	T	S	L	Q	Y	F	R	G	V	P	N	D	Y	Y	G	V	D	L	L	D	V	R	T	T	V	T	N	A	L	S	D	P	S	A	L	H	G	W	Q	I	R	L	D	G	E	Y	P	T	C	R	P	E	D	I	E	F	A	E	S	L	E

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-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	V	P	D	W	E	E	V	L	G	L	W	R	A	G	R	Y	Y	E	V	H	E	V	L	E	P	Y	W	L	K	A	T	-	-	G	E	E	R	R	L	L	Q	G	V	I	L	L	A	A	A	L	H	Q	R	R	L	-	G	R	-	-	P	G	L	R	N	L	R	K	A	E	A	R	L	E	G	L	P	C	P	L	-	G	L	D	W	R	S	L	L	Q	E	A	R	R	R	L	G	A	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
G	N	P	S	G	W	R	T	D	G	Q	W	E	H	E	T	L	R	R	A	V	V	H	G	V	R	L	Y	N	S	G	E	F	H	E	S	H	D	C	F	E	D	E	W	Y	N	Y	G	R	G	N	T	E	S	K	F	L	H	G	M	V	Q	V	A	A	G	A	Y	K	H	F	D	F	E	D	D	D	G	M	R	S	L	F	R	T	S	L	Q	Y	F	R	G	V	P	N	D	Y	Y	G	V	D	L	L	D	V	R	T	T	V	T	N	A	L	S	D	P	S	A	L	H	G	W	Q	I	R	L	D	G	E	Y	P	T	C	R	P	E	D	I	E	F	A	E	S	L	E