PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d2fj6a1  (   1 )    mksFyhyllkyrhpkpkdsiSefAnqayedhsfpktstdyheissyleln
d2o6ka1  (   4 )     ysFyqFV-tVrg--rhddkGrLAeeIfddlaFpkhdddfniLsdyieth
                       aaaa           aaaaaaaaaa           aaaaaaaaaa 

                             60        70   
d2fj6a1  (  51 )    adylhtmatFdeAwdqYesevhgr
d2o6ka1  (  51 )    Gdf-tlpsvfddLyeeYtewlkf 
                            aaaaaaaaaaaaa

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d2fj6a1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2fj6a1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Hypothetical protein YozE	YozE-like	Bacillus subtilis [TaxId: 1423]		view
d2o6ka1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2o6ka1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Uncharacterized protein MW1311	YozE-like	Staphylococcus aureus [TaxId: 1280]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

									10										20										30										40										50										60										70
M	K	S	F	Y	H	Y	L	L	K	Y	R	H	P	K	P	K	D	S	I	S	E	F	A	N	Q	A	Y	E	D	H	S	F	P	K	T	S	T	D	Y	H	E	I	S	S	Y	L	E	L	N	A	D	Y	L	H	T	M	A	T	F	D	E	A	W	D	Q	Y	E	S	E	V	H	G	R
-	Y	S	F	Y	Q	F	V	-	T	V	R	G	-	-	R	H	D	D	K	G	R	L	A	E	E	I	F	D	D	L	A	F	P	K	H	D	D	D	F	N	I	L	S	D	Y	I	E	T	H	G	D	F	-	T	L	P	S	V	F	D	D	L	Y	E	E	Y	T	E	W	L	K	F	-

Member	Chain	UniProtKB	GO term

									10										20										30										40										50										60										70
M	K	S	F	Y	H	Y	L	L	K	Y	R	H	P	K	P	K	D	S	I	S	E	F	A	N	Q	A	Y	E	D	H	S	F	P	K	T	S	T	D	Y	H	E	I	S	S	Y	L	E	L	N	A	D	Y	L	H	T	M	A	T	F	D	E	A	W	D	Q	Y	E	S	E	V	H	G	R
-	Y	S	F	Y	Q	F	V	-	T	V	R	G	-	-	R	H	D	D	K	G	R	L	A	E	E	I	F	D	D	L	A	F	P	K	H	D	D	D	F	N	I	L	S	D	Y	I	E	T	H	G	D	F	-	T	L	P	S	V	F	D	D	L	Y	E	E	Y	T	E	W	L	K	F	-

									10										20										30										40										50										60										70
M	K	S	F	Y	H	Y	L	L	K	Y	R	H	P	K	P	K	D	S	I	S	E	F	A	N	Q	A	Y	E	D	H	S	F	P	K	T	S	T	D	Y	H	E	I	S	S	Y	L	E	L	N	A	D	Y	L	H	T	M	A	T	F	D	E	A	W	D	Q	Y	E	S	E	V	H	G	R
-	Y	S	F	Y	Q	F	V	-	T	V	R	G	-	-	R	H	D	D	K	G	R	L	A	E	E	I	F	D	D	L	A	F	P	K	H	D	D	D	F	N	I	L	S	D	Y	I	E	T	H	G	D	F	-	T	L	P	S	V	F	D	D	L	Y	E	E	Y	T	E	W	L	K	F	-

									10										20										30										40										50										60										70
M	K	S	F	Y	H	Y	L	L	K	Y	R	H	P	K	P	K	D	S	I	S	E	F	A	N	Q	A	Y	E	D	H	S	F	P	K	T	S	T	D	Y	H	E	I	S	S	Y	L	E	L	N	A	D	Y	L	H	T	M	A	T	F	D	E	A	W	D	Q	Y	E	S	E	V	H	G	R
-	Y	S	F	Y	Q	F	V	-	T	V	R	G	-	-	R	H	D	D	K	G	R	L	A	E	E	I	F	D	D	L	A	F	P	K	H	D	D	D	F	N	I	L	S	D	Y	I	E	T	H	G	D	F	-	T	L	P	S	V	F	D	D	L	Y	E	E	Y	T	E	W	L	K	F	-