PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1xkpa1  (  73 )    lsdsqarvsdVeeqVnqylsvpeleqqnvsellsllsnspnislsqLayL
d1xl3c1  (   2 )    aydlsefmgdIvalvd-----------------------rwagihdIehL
d1z21a1  (  42 )         saektrevlWqqyyasn---------------------ppdhavL
                          aaaaaaaaa                                   

                             60        70        80        90        100 
d1xkpa1  ( 126 )    egse---EpSeQFMLcgLrdaLgrpelahLshlVeqALvsmAeeqGetIv
d1xl3c1  (  30 )    AnafslptpeivrfyqdLrmFrlfplgvFsdeeqrqnLlqmcq------n
d1z21a1  (  66 )    evLA---tpVreaLlarFgqhqg----svvpaiDlpeLrsVLqqfdsfgk
                                  aaa              aaaaaaaaaaaa      a

                             110       120       130       140       150 
d1xkpa1  ( 176 )    lGArItpeAyresqsgvNplqpLRdTYrdAvmgyqgiyaiwsdLqrFpnG
d1xl3c1  (  76 )    AidmAieseeeelsel----------------------------------
d1z21a1  ( 109 )    rWeaILlqVlegil---pYLseLInkElmill                  
                    aaaaaaaaaaa                                       

                             160       170       180      
d1xkpa1  ( 227 )    didsVilfLqALsadlqsqqsgsgrelgiVisdLqLef
d1xl3c1  (  92 )    -------------------------------------d
d1z21a1

Domains
Outliers

Domain ID	Name	Family	Source	STRING-DB
d1xkpa1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1xkpa1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Outer membrane protein yopN (LcrE)	LcrE-like	Yersinia pestis [TaxId: 632]	view
d1xl3c1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1xl3c1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	TyeA	TyeA-like	Yersinia pestis [TaxId: 632]	view
d1z21a1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1z21a1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Yop proteins translocation protein H, YscH (IcrP)	YopR Core	Yersinia pestis [TaxId: 632]	view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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Search:

Member	Chain	UniProtKB	GO term
d1xkpa1	A	P68640	GO:0009986
d1xkpa1	A	P68640	GO:0019867
d1xkpa1	A	P68640	GO:0030254
d1xkpa1	A	P68640	GO:0046903
d1xkpa1	A	P68640	GO:0050709
d1xkpa1	A	P61380	GO:0009986
d1xkpa1	A	P61380	GO:0019867
d1xkpa1	A	P61380	GO:0030254
d1xkpa1	A	P61380	GO:0046903
d1xkpa1	A	P61380	GO:0050709

Showing 1 to 10 of 47 entries

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