PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1x3aa1  (   8 )    tndeetiqqqilalSadkrnFlrdPpagvqfnFdfdqmypvAlvmlqeDe
d2diia1  (   8 )            fkrka----------------------nkeleeknrmlqedp
                                                         aaaaaaaaaaa a

                             60        70        80       
d1x3aa1  (  58 )    llskmrfalvpk-lvkeevFWrnYfyrvslikqsaqlt
d2diia1  (  28 )    vlfqlykdlvvsqvisaeefwanrlnvn          
                    aaaaaaaa        aaaaaa

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d1x3aa1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1x3aa1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Synapse associated protein 1, SYAP1	BSD domain	Human (Homo sapiens) [TaxId: 9606]		view
d2diia1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2diia1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	TFIIH basal transcription factor complex p62 subunit, BTF2	BSD domain	Human (Homo sapiens) [TaxId: 9606]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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T	N	D	E	E	T	I	Q	Q	Q	I	L	A	L	S	A	D	K	R	N	F	L	R	D	P	P	A	G	V	Q	F	N	F	D	F	D	Q	M	Y	P	V	A	L	V	M	L	Q	E	D	E	L	L	S	K	M	R	F	A	L	V	P	K	-	L	V	K	E	E	V	F	W	R	N	Y	F	Y	R	V	S	L	I	K	Q	S	A	Q	L	T
-	-	-	-	-	-	-	-	F	K	R	K	A	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	N	K	E	L	E	E	K	N	R	M	L	Q	E	D	P	V	L	F	Q	L	Y	K	D	L	V	V	S	Q	V	I	S	A	E	E	F	W	A	N	R	L	N	V	N	-	-	-	-	-	-	-	-	-	-

Member	Chain	UniProtKB	GO term
d2diia1	A	P32780	GO:0000439
d2diia1	A	P32780	GO:0006289
d2diia1	A	P32780	GO:0006351

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T	N	D	E	E	T	I	Q	Q	Q	I	L	A	L	S	A	D	K	R	N	F	L	R	D	P	P	A	G	V	Q	F	N	F	D	F	D	Q	M	Y	P	V	A	L	V	M	L	Q	E	D	E	L	L	S	K	M	R	F	A	L	V	P	K	-	L	V	K	E	E	V	F	W	R	N	Y	F	Y	R	V	S	L	I	K	Q	S	A	Q	L	T
-	-	-	-	-	-	-	-	F	K	R	K	A	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	N	K	E	L	E	E	K	N	R	M	L	Q	E	D	P	V	L	F	Q	L	Y	K	D	L	V	V	S	Q	V	I	S	A	E	E	F	W	A	N	R	L	N	V	N	-	-	-	-	-	-	-	-	-	-

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T	N	D	E	E	T	I	Q	Q	Q	I	L	A	L	S	A	D	K	R	N	F	L	R	D	P	P	A	G	V	Q	F	N	F	D	F	D	Q	M	Y	P	V	A	L	V	M	L	Q	E	D	E	L	L	S	K	M	R	F	A	L	V	P	K	-	L	V	K	E	E	V	F	W	R	N	Y	F	Y	R	V	S	L	I	K	Q	S	A	Q	L	T
-	-	-	-	-	-	-	-	F	K	R	K	A	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	N	K	E	L	E	E	K	N	R	M	L	Q	E	D	P	V	L	F	Q	L	Y	K	D	L	V	V	S	Q	V	I	S	A	E	E	F	W	A	N	R	L	N	V	N	-	-	-	-	-	-	-	-	-	-

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T	N	D	E	E	T	I	Q	Q	Q	I	L	A	L	S	A	D	K	R	N	F	L	R	D	P	P	A	G	V	Q	F	N	F	D	F	D	Q	M	Y	P	V	A	L	V	M	L	Q	E	D	E	L	L	S	K	M	R	F	A	L	V	P	K	-	L	V	K	E	E	V	F	W	R	N	Y	F	Y	R	V	S	L	I	K	Q	S	A	Q	L	T
-	-	-	-	-	-	-	-	F	K	R	K	A	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	N	K	E	L	E	E	K	N	R	M	L	Q	E	D	P	V	L	F	Q	L	Y	K	D	L	V	V	S	Q	V	I	S	A	E	E	F	W	A	N	R	L	N	V	N	-	-	-	-	-	-	-	-	-	-