PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1z0jb1  ( 734 )                       ieelLl-qidnikayiakgdevvltenlrel
d1z0kb1  ( 441 )    egwlplsgggsedsdpllqqihnItsfirqAkaag-------rmdeVrtl
                                               aaaaaa          aaaaaaa

                             60   
d1z0jb1  ( 773 )    khtlakqkggtd  
d1z0kb1  ( 486 )    qenlrqlqdeydqq
                    aaaaaaa

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d1z0jb1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1z0jb1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	FYVE finger-containing Rab5 effector protein rabenosyn-5	Rabenosyn-5 Rab-binding domain-like	Human (Homo sapiens) [TaxId: 9606]		view
d1z0kb1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1z0kb1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	FYVE finger-containing Rab5 effector protein rabenosyn-5	Rabenosyn-5 Rab-binding domain-like	Human (Homo sapiens) [TaxId: 9606]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	I	E	E	L	L	L	-	Q	I	D	N	I	K	A	Y	I	A	K	G	D	E	V	V	L	T	E	N	L	R	E	L	K	H	T	L	A	K	Q	K	G	G	T	D	-	-
E	G	W	L	P	L	S	G	G	G	S	E	D	S	D	P	L	L	Q	Q	I	H	N	I	T	S	F	I	R	Q	A	K	A	A	G	-	-	-	-	-	-	-	R	M	D	E	V	R	T	L	Q	E	N	L	R	Q	L	Q	D	E	Y	D	Q	Q

Member	Chain	UniProtKB	GO term

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E	G	W	L	P	L	S	G	G	G	S	E	D	S	D	P	L	L	Q	Q	I	H	N	I	T	S	F	I	R	Q	A	K	A	A	G	-	-	-	-	-	-	-	R	M	D	E	V	R	T	L	Q	E	N	L	R	Q	L	Q	D	E	Y	D	Q	Q

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-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	I	E	E	L	L	L	-	Q	I	D	N	I	K	A	Y	I	A	K	G	D	E	V	V	L	T	E	N	L	R	E	L	K	H	T	L	A	K	Q	K	G	G	T	D	-	-
E	G	W	L	P	L	S	G	G	G	S	E	D	S	D	P	L	L	Q	Q	I	H	N	I	T	S	F	I	R	Q	A	K	A	A	G	-	-	-	-	-	-	-	R	M	D	E	V	R	T	L	Q	E	N	L	R	Q	L	Q	D	E	Y	D	Q	Q

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-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	I	E	E	L	L	L	-	Q	I	D	N	I	K	A	Y	I	A	K	G	D	E	V	V	L	T	E	N	L	R	E	L	K	H	T	L	A	K	Q	K	G	G	T	D	-	-
E	G	W	L	P	L	S	G	G	G	S	E	D	S	D	P	L	L	Q	Q	I	H	N	I	T	S	F	I	R	Q	A	K	A	A	G	-	-	-	-	-	-	-	R	M	D	E	V	R	T	L	Q	E	N	L	R	Q	L	Q	D	E	Y	D	Q	Q